Calcium in PDB 3qta: Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution, PDB code: 3qta
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.98 /
2.00
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
89.928,
89.928,
148.299,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.5 /
20.2
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution
(pdb code 3qta). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the
Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution, PDB code: 3qta:
Jump to Calcium binding site number:
1;
2;
3;
Calcium binding site 1 out
of 3 in 3qta
Go back to
Calcium Binding Sites List in 3qta
Calcium binding site 1 out
of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca300
b:43.8
occ:1.00
|
O
|
A:HOH509
|
2.1
|
34.1
|
1.0
|
OD1
|
A:ASP168
|
2.3
|
41.8
|
1.0
|
O
|
A:HOH387
|
2.3
|
33.2
|
1.0
|
O
|
A:SER172
|
2.4
|
44.1
|
1.0
|
O
|
A:ILE169
|
2.5
|
35.5
|
1.0
|
O
|
A:HOH415
|
2.6
|
49.9
|
1.0
|
O
|
A:HOH511
|
2.7
|
47.1
|
1.0
|
O
|
A:HOH538
|
2.9
|
50.2
|
1.0
|
CG
|
A:ASP168
|
3.5
|
37.9
|
1.0
|
C
|
A:ILE169
|
3.6
|
34.7
|
1.0
|
C
|
A:SER172
|
3.6
|
44.8
|
1.0
|
OD2
|
A:ASP168
|
3.9
|
44.5
|
1.0
|
N
|
A:SER172
|
4.1
|
45.7
|
1.0
|
O
|
A:HOH626
|
4.1
|
54.3
|
1.0
|
N
|
A:ILE169
|
4.2
|
31.2
|
1.0
|
C
|
A:ASP168
|
4.4
|
31.2
|
1.0
|
N
|
A:LYS170
|
4.4
|
36.8
|
1.0
|
CA
|
A:LYS170
|
4.4
|
40.2
|
1.0
|
CA
|
A:SER172
|
4.4
|
45.1
|
1.0
|
O
|
A:VAL174
|
4.4
|
34.8
|
1.0
|
CA
|
A:ILE169
|
4.5
|
32.2
|
1.0
|
N
|
A:GLU171
|
4.5
|
44.6
|
1.0
|
N
|
A:ASP173
|
4.6
|
45.3
|
1.0
|
C
|
A:LYS170
|
4.6
|
41.8
|
1.0
|
CA
|
A:ASP173
|
4.7
|
45.8
|
1.0
|
O
|
A:HOH463
|
4.7
|
53.7
|
1.0
|
CB
|
A:ASP168
|
4.7
|
33.2
|
1.0
|
O
|
A:ASP168
|
4.7
|
30.2
|
1.0
|
CA
|
A:ASP168
|
4.9
|
31.6
|
1.0
|
|
Calcium binding site 2 out
of 3 in 3qta
Go back to
Calcium Binding Sites List in 3qta
Calcium binding site 2 out
of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:31.5
occ:1.00
|
OD2
|
A:ASP201
|
2.4
|
27.4
|
1.0
|
O
|
A:HOH381
|
2.4
|
37.6
|
1.0
|
O
|
A:HOH344
|
2.4
|
29.1
|
1.0
|
O
|
A:HOH489
|
2.5
|
28.8
|
1.0
|
OD2
|
A:ASP197
|
2.5
|
22.6
|
1.0
|
O
|
A:HOH490
|
2.5
|
36.2
|
1.0
|
OD1
|
A:ASP197
|
2.6
|
19.9
|
1.0
|
OD1
|
A:ASP201
|
2.7
|
29.2
|
1.0
|
CG
|
A:ASP197
|
2.9
|
19.8
|
1.0
|
CG
|
A:ASP201
|
2.9
|
27.7
|
1.0
|
O
|
A:HOH437
|
3.9
|
48.4
|
1.0
|
O
|
A:HOH469
|
4.2
|
51.9
|
1.0
|
CB
|
A:ASP197
|
4.4
|
18.8
|
1.0
|
O
|
A:ASP197
|
4.4
|
20.2
|
1.0
|
O
|
A:HOH376
|
4.4
|
39.8
|
1.0
|
CB
|
A:ASP201
|
4.4
|
27.4
|
1.0
|
CE
|
A:LYS9
|
4.6
|
17.4
|
1.0
|
C
|
A:ASP197
|
4.8
|
19.6
|
1.0
|
O
|
A:HOH352
|
4.9
|
33.0
|
1.0
|
|
Calcium binding site 3 out
of 3 in 3qta
Go back to
Calcium Binding Sites List in 3qta
Calcium binding site 3 out
of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca300
b:42.7
occ:1.00
|
O
|
B:HOH507
|
2.2
|
31.2
|
1.0
|
O
|
B:HOH341
|
2.2
|
40.1
|
1.0
|
OD1
|
B:ASP168
|
2.4
|
40.9
|
1.0
|
O
|
B:SER172
|
2.4
|
42.3
|
1.0
|
O
|
B:HOH527
|
2.5
|
45.8
|
1.0
|
O
|
B:HOH379
|
2.5
|
45.4
|
1.0
|
O
|
B:ILE169
|
2.5
|
38.8
|
1.0
|
CG
|
B:ASP168
|
3.4
|
36.2
|
1.0
|
C
|
B:SER172
|
3.6
|
41.9
|
1.0
|
C
|
B:ILE169
|
3.7
|
37.8
|
1.0
|
OD2
|
B:ASP168
|
3.9
|
43.0
|
1.0
|
N
|
B:ILE169
|
4.2
|
33.4
|
1.0
|
N
|
B:SER172
|
4.2
|
43.1
|
1.0
|
O
|
B:HOH579
|
4.2
|
60.7
|
1.0
|
O
|
B:VAL174
|
4.4
|
33.9
|
1.0
|
O
|
B:HOH577
|
4.4
|
58.1
|
1.0
|
C
|
B:ASP168
|
4.5
|
32.8
|
1.0
|
CA
|
B:LYS170
|
4.5
|
42.6
|
1.0
|
N
|
B:LYS170
|
4.5
|
39.5
|
1.0
|
CA
|
B:SER172
|
4.5
|
41.7
|
1.0
|
N
|
B:ASP173
|
4.5
|
42.2
|
1.0
|
CA
|
B:ILE169
|
4.5
|
35.1
|
1.0
|
CA
|
B:ASP173
|
4.6
|
42.3
|
1.0
|
O
|
B:HOH580
|
4.6
|
52.2
|
1.0
|
O
|
B:HOH619
|
4.6
|
55.6
|
1.0
|
N
|
B:GLU171
|
4.7
|
44.9
|
1.0
|
CB
|
B:ASP168
|
4.7
|
32.9
|
1.0
|
O
|
B:HOH562
|
4.7
|
52.4
|
1.0
|
C
|
B:LYS170
|
4.7
|
43.1
|
1.0
|
O
|
B:ASP168
|
4.8
|
34.1
|
1.0
|
CA
|
B:ASP168
|
4.9
|
31.9
|
1.0
|
CB
|
B:SER172
|
5.0
|
40.2
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 13 17:40:17 2024
|