Calcium in PDB 3rht: Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus

The structure of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus, PDB code: 3rht was solved by K.Michalska, H.Li, J.Bearden, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.83
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.287, 126.827, 101.964, 90.00, 96.60, 90.00
R / Rfree (%)	15.8 / 19.2

The structure of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Sodium	(Na)	3 atoms

The binding sites of Calcium atom in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus (pdb code 3rht). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus, PDB code: 3rht:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca257 b:14.3 occ:1.00 OD1 A:ASP9 2.3 15.7 1.0 OD2 A:ASP55 2.3 15.2 1.0 OD2 A:ASP207 2.4 13.7 1.0 O A:HOH262 2.4 16.0 1.0 O A:HOH263 2.4 16.4 1.0 OD1 A:ASP207 2.5 14.6 1.0 CG A:ASP207 2.7 14.4 1.0 CG A:ASP55 3.2 18.0 1.0 CG A:ASP9 3.5 15.6 1.0 CB A:ASP55 3.8 16.0 1.0 OG A:SER54 4.1 15.2 1.0 O A:HOH305 4.1 22.6 1.0 O A:GLY83 4.2 13.1 1.0 OD1 A:ASP55 4.2 18.4 1.0 OD2 A:ASP9 4.2 16.9 1.0 O1 A:GOL260 4.2 12.5 1.0 CB A:ASP207 4.3 14.3 1.0 C1 A:GOL260 4.4 13.9 1.0 CB A:ASP9 4.5 14.3 1.0 CB A:ALA209 4.6 11.5 1.0 O A:PRO210 4.7 16.2 1.0 CA A:ASP9 4.7 15.2 1.0 O A:ALA209 4.7 13.3 1.0 CA A:GLY84 4.8 13.2 1.0 O3 A:GOL260 4.8 13.1 1.0 N A:ASP55 4.8 15.3 1.0 N A:ALA209 4.9 13.3 1.0 C A:SER54 4.9 14.7 1.0 CA A:ASP55 4.9 15.3 1.0 O A:SER54 5.0 14.9 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca257 b:11.9 occ:1.00 OD1 B:ASP9 2.2 11.0 1.0 OD2 B:ASP55 2.3 14.8 1.0 O B:HOH264 2.4 13.1 1.0 O B:HOH265 2.4 11.9 1.0 OD2 B:ASP207 2.4 10.4 1.0 OD1 B:ASP207 2.5 12.1 1.0 CG B:ASP207 2.8 11.2 1.0 CG B:ASP55 3.2 15.5 1.0 CG B:ASP9 3.4 12.7 1.0 CB B:ASP55 3.7 14.3 1.0 OG B:SER54 4.0 13.2 1.0 O B:HOH281 4.1 22.5 1.0 OD2 B:ASP9 4.1 16.0 1.0 O B:GLY83 4.2 13.1 1.0 O1 B:GOL260 4.2 10.1 1.0 OD1 B:ASP55 4.3 17.1 1.0 CB B:ASP207 4.3 9.0 1.0 C1 B:GOL260 4.3 11.7 1.0 CB B:ASP9 4.5 14.2 1.0 CB B:ALA209 4.6 11.4 1.0 CA B:ASP9 4.6 13.6 1.0 O B:PRO210 4.6 13.9 1.0 CA B:GLY84 4.7 12.6 1.0 O3 B:GOL260 4.8 10.8 1.0 N B:ASP55 4.8 13.2 1.0 O B:ALA209 4.8 8.9 1.0 CA B:ASP55 4.9 14.2 1.0 N B:ALA209 4.9 11.3 1.0 C B:SER54 4.9 13.6 1.0 O B:SER54 5.0 13.6 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca257 b:13.3 occ:1.00 OD1 C:ASP9 2.3 13.5 1.0 OD2 C:ASP55 2.3 15.1 1.0 O C:HOH263 2.3 13.6 1.0 O C:HOH264 2.4 12.0 1.0 OD1 C:ASP207 2.4 10.4 1.0 OD2 C:ASP207 2.4 13.3 1.0 CG C:ASP207 2.7 13.8 1.0 CG C:ASP55 3.2 16.4 1.0 CG C:ASP9 3.5 17.4 1.0 CB C:ASP55 3.8 14.2 1.0 OG C:SER54 4.0 16.2 1.0 O C:GLY83 4.2 12.2 1.0 OD2 C:ASP9 4.2 17.6 1.0 OD1 C:ASP55 4.2 16.1 1.0 O1 C:GOL260 4.2 12.9 1.0 O C:HOH297 4.2 24.0 1.0 CB C:ASP207 4.3 11.9 1.0 C1 C:GOL260 4.4 12.5 1.0 CB C:ASP9 4.5 15.1 1.0 CB C:ALA209 4.5 12.7 1.0 O C:PRO210 4.7 14.2 1.0 CA C:ASP9 4.7 15.3 1.0 O3 C:GOL260 4.7 13.5 1.0 CA C:GLY84 4.8 13.4 1.0 O C:ALA209 4.8 9.6 1.0 N C:ASP55 4.8 14.2 1.0 CA C:ASP55 4.9 15.0 1.0 C C:SER54 4.9 14.8 1.0 N C:ALA209 4.9 11.1 1.0 O C:SER54 5.0 15.6 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca257 b:13.1 occ:1.00 OD1 D:ASP9 2.3 13.5 1.0 OD2 D:ASP55 2.3 12.3 1.0 O D:HOH262 2.3 11.8 1.0 OD2 D:ASP207 2.4 9.6 1.0 O D:HOH263 2.4 13.4 1.0 OD1 D:ASP207 2.4 12.2 1.0 CG D:ASP207 2.7 12.6 1.0 CG D:ASP55 3.2 13.1 1.0 CG D:ASP9 3.5 14.2 1.0 CB D:ASP55 3.7 13.5 1.0 O D:GLY83 4.1 12.0 1.0 O D:HOH316 4.1 23.6 1.0 O1 D:GOL259 4.1 14.0 1.0 OG D:SER54 4.1 14.2 1.0 OD1 D:ASP55 4.2 14.5 1.0 OD2 D:ASP9 4.2 15.3 1.0 CB D:ASP207 4.2 11.5 1.0 C1 D:GOL259 4.4 12.4 1.0 CB D:ASP9 4.5 13.9 1.0 CB D:ALA209 4.6 12.8 1.0 CA D:ASP9 4.6 14.0 1.0 O D:PRO210 4.7 15.6 1.0 CA D:GLY84 4.7 11.9 1.0 O3 D:GOL259 4.7 15.2 1.0 O D:ALA209 4.8 13.3 1.0 N D:ASP55 4.9 12.5 1.0 CA D:ASP55 4.9 13.7 1.0 N D:ALA209 4.9 11.8 1.0 C D:SER54 5.0 13.4 1.0

K.Michalska, H.Li, J.Bearden, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Type 1 Glutamine Amidotransferase (GATASE1)-Like Protein From Planctomyces Limnophilus To Be Published.