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Calcium in PDB 3rso: H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set

Protein crystallography data

The structure of H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set, PDB code: 3rso was solved by C.Mattos, G.Buhrman, B.Kearney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.27 / 1.60
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 88.496, 88.496, 134.094, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 19.9

Other elements in 3rso:

The structure of H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set (pdb code 3rso). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set, PDB code: 3rso:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3rso

Go back to Calcium Binding Sites List in 3rso
Calcium binding site 1 out of 2 in the H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca193

b:16.8
occ:1.00
O A:PHE28 2.4 17.0 1.0
OD2 A:ASP30 2.4 19.0 1.0
O A:HOH309 2.4 23.7 1.0
C A:PHE28 3.6 17.1 1.0
CG A:ASP30 3.6 17.3 1.0
N A:ASP30 4.0 15.9 1.0
O2 A:RSG204 4.1 43.3 1.0
CA A:VAL29 4.4 16.2 1.0
CB A:ASP30 4.4 16.9 1.0
N A:VAL29 4.4 14.3 1.0
O A:HOH449 4.5 43.0 1.0
OD1 A:ASP30 4.5 21.1 1.0
CA A:PHE28 4.6 16.6 1.0
O A:HOH312 4.6 24.5 1.0
C A:VAL29 4.7 14.4 1.0
C5 A:RSG204 4.7 41.3 1.0
N A:PHE28 4.7 16.7 1.0
O A:HOH427 4.7 39.4 1.0
CB A:PHE28 4.8 17.1 1.0
CA A:ASP30 4.8 16.1 1.0

Calcium binding site 2 out of 2 in 3rso

Go back to Calcium Binding Sites List in 3rso
Calcium binding site 2 out of 2 in the H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of H-Ras Soaked in 20% S,R,S-Bisfuranol: 1 of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca195

b:25.8
occ:0.36
O A:ARG102 2.4 28.6 1.0
OD2 A:ASP105 2.8 32.6 1.0
OD1 A:ASP105 2.9 53.5 1.0
CG A:ASP105 3.1 35.0 1.0
O A:HOH393 3.1 44.8 0.9
C A:ARG102 3.4 27.1 1.0
O A:HOH396 3.9 19.7 0.5
CA A:ARG102 4.1 24.7 1.0
N A:VAL103 4.3 22.9 1.0
CB A:ASP105 4.4 27.9 1.0
CA A:VAL103 4.5 23.4 1.0
CB A:ARG102 4.6 28.2 1.0
N A:ASP105 4.6 24.9 1.0
CA A:ASP105 4.6 23.3 1.0
C A:VAL103 4.7 27.4 1.0
O A:VAL103 4.7 31.9 1.0

Reference:

G.Buhrman, C.O Connor, B.Zerbe, B.M.Kearney, R.Napoleon, E.A.Kovrigina, S.Vajda, D.Kozakov, E.L.Kovrigin, C.Mattos. Analysis of Binding Site Hot Spots on the Surface of Ras Gtpase. J.Mol.Biol. V. 413 773 2011.
ISSN: ISSN 0022-2836
PubMed: 21945529
DOI: 10.1016/J.JMB.2011.09.011
Page generated: Sat Jul 13 18:11:59 2024

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