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Calcium in PDB 3ryd: Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus

Enzymatic activity of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus

All present enzymatic activity of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus:
3.1.3.25;

Protein crystallography data

The structure of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus, PDB code: 3ryd was solved by S.Bhattacharyya, D.Dutta, A.K.Ghosh, A.K.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.68 / 2.37
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.878, 68.046, 143.898, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 27.8

Other elements in 3ryd:

The structure of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus also contains other interesting chemical elements:

Potassium (K) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus (pdb code 3ryd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus, PDB code: 3ryd:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3ryd

Go back to Calcium Binding Sites List in 3ryd
Calcium binding site 1 out of 3 in the Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca266

b:44.8
occ:1.00
OD2 A:ASP88 2.3 24.6 1.0
OD1 A:ASP209 2.5 18.5 1.0
OD1 A:ASP91 2.6 15.1 1.0
O11 A:SRT267 2.9 35.2 1.0
O3 A:SRT267 3.1 42.9 1.0
CA A:CA270 3.3 37.5 1.0
CG A:ASP88 3.5 17.1 1.0
CG A:ASP91 3.6 13.9 1.0
C3 A:SRT267 3.6 45.4 1.0
OE2 A:GLU70 3.6 37.4 1.0
CG A:ASP209 3.7 17.9 1.0
C1 A:SRT267 3.8 41.5 1.0
O A:HOH364 3.8 27.7 1.0
CA A:ASP91 3.8 12.5 1.0
CB A:ASP91 3.9 12.6 1.0
OD1 A:ASP88 4.0 19.6 1.0
C2 A:SRT267 4.1 44.2 1.0
O2 A:SRT267 4.4 46.5 1.0
N A:GLY92 4.4 12.3 1.0
O A:ILE90 4.5 13.4 1.0
CD1 A:TRP208 4.5 15.6 1.0
OD2 A:ASP209 4.5 20.3 1.0
O A:HOH272 4.6 25.5 1.0
CA A:ASP209 4.6 17.8 1.0
CB A:ASP209 4.6 17.7 1.0
CB A:ASP88 4.7 14.6 1.0
C A:ASP91 4.7 12.5 1.0
OD2 A:ASP91 4.7 16.6 1.0
CD A:GLU70 4.8 39.9 1.0
N A:ASP91 4.9 12.3 1.0
O1 A:SRT267 4.9 41.0 1.0
NE1 A:TRP208 5.0 16.3 1.0
C4 A:SRT267 5.0 46.7 1.0

Calcium binding site 2 out of 3 in 3ryd

Go back to Calcium Binding Sites List in 3ryd
Calcium binding site 2 out of 3 in the Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca270

b:37.5
occ:1.00
O A:ILE90 2.4 13.4 1.0
OD1 A:ASP88 2.8 19.6 1.0
OE2 A:GLU70 2.8 37.4 1.0
O A:HOH335 2.9 26.0 1.0
O11 A:SRT267 3.2 35.2 1.0
CA A:CA266 3.3 44.8 1.0
OD2 A:ASP88 3.4 24.6 1.0
OG1 A:THR93 3.4 21.6 1.0
CG A:ASP88 3.4 17.1 1.0
CD A:GLU70 3.5 39.9 1.0
O2 A:SRT267 3.5 46.5 1.0
C A:ILE90 3.6 12.3 1.0
CG A:GLU70 3.8 39.6 1.0
C1 A:SRT267 4.0 41.5 1.0
CA A:ASP91 4.1 12.5 1.0
O A:HOH282 4.2 36.1 1.0
N A:ASP91 4.2 12.3 1.0
C2 A:SRT267 4.3 44.2 1.0
OE1 A:GLU70 4.5 41.6 1.0
OD2 A:ASP47 4.5 33.7 1.0
CA A:ILE90 4.7 11.2 1.0
C3 A:SRT267 4.7 45.4 1.0
CB A:THR93 4.7 16.8 1.0
N A:ILE90 4.8 11.7 1.0
N A:GLY92 4.9 12.3 1.0
CB A:ASP88 4.9 14.6 1.0
CB A:GLU70 5.0 40.6 1.0
C A:ASP91 5.0 12.5 1.0
N A:THR93 5.0 13.9 1.0
CB A:ASP91 5.0 12.6 1.0

Calcium binding site 3 out of 3 in 3ryd

Go back to Calcium Binding Sites List in 3ryd
Calcium binding site 3 out of 3 in the Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Strucutre of Ca Bound Impase Family Protein From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca267

b:47.4
occ:1.00
O4 C:SRT268 2.1 53.5 1.0
OD1 C:ASP209 2.2 24.1 1.0
OD2 C:ASP88 2.3 20.0 1.0
OD1 C:ASP91 2.6 19.8 1.0
C4 C:SRT268 2.7 54.6 1.0
O41 C:SRT268 2.8 50.1 1.0
O C:HOH269 3.0 2.0 1.0
CG C:ASP88 3.4 18.4 1.0
CG C:ASP209 3.5 23.6 1.0
CG C:ASP91 3.5 19.1 1.0
CA C:ASP91 3.7 18.0 1.0
CB C:ASP91 3.7 17.4 1.0
O C:HOH291 3.8 9.4 1.0
OD1 C:ASP88 3.9 18.9 1.0
C3 C:SRT268 4.1 55.3 1.0
OD2 C:ASP209 4.2 24.3 1.0
N C:GLY92 4.3 17.0 1.0
O C:ILE90 4.4 21.8 1.0
C2 C:SRT268 4.4 56.6 1.0
CB C:ASP209 4.5 21.6 1.0
C C:ASP91 4.5 17.1 1.0
CA C:ASP209 4.7 22.2 1.0
CB C:ASP88 4.7 18.6 1.0
OD2 C:ASP91 4.7 19.4 1.0
N C:ASP91 4.7 19.5 1.0
O3 C:SRT268 4.8 56.6 1.0
CD1 C:TRP208 4.9 26.0 1.0
O C:HOH313 5.0 22.4 1.0

Reference:

S.Bhattacharyya, D.Dutta, B.Saha, A.K.Ghosh, A.K.Das. Crystal Structure of Staphylococcal Dual Specific Inositol Monophosphatase/Nadp(H) Phosphatase (SAS2203) Delineates the Molecular Basis of Substrate Specificity Biochimie V. 94 879 2012.
ISSN: ISSN 0300-9084
PubMed: 22197784
DOI: 10.1016/J.BIOCHI.2011.12.007
Page generated: Sat Dec 12 04:29:16 2020

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