Calcium in PDB 3rza: Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution

The structure of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution, PDB code: 3rza was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.52 / 2.10
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	46.996, 57.805, 79.857, 89.67, 73.38, 72.36
R / Rfree (%)	16.7 / 21.2

The structure of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution (pdb code 3rza). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution, PDB code: 3rza:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:32.3 occ:1.00 OD2 A:ASP110 2.1 23.8 1.0 OE2 A:GLU144 2.2 23.4 1.0 NE2 A:HIS347 2.2 27.3 1.0 O A:HOH417 2.6 33.9 1.0 OE1 A:GLU144 2.8 22.2 1.0 CD A:GLU144 2.8 26.1 1.0 CG A:ASP110 3.1 19.6 1.0 CE1 A:HIS347 3.2 29.8 1.0 O A:HOH735 3.2 42.2 1.0 CD2 A:HIS347 3.2 24.8 1.0 OD1 A:ASP110 3.5 17.8 1.0 ZN A:ZN401 3.6 26.6 1.0 O A:HOH424 3.8 12.9 1.0 OE1 A:GLU143 4.3 21.8 1.0 CG A:GLU144 4.3 23.7 1.0 ND1 A:HIS347 4.3 29.3 1.0 CB A:ASP110 4.3 18.7 1.0 CG A:HIS347 4.3 23.6 1.0 CD1 A:ILE346 4.3 24.3 1.0 CG1 A:VAL83 4.5 21.0 1.0 O A:HOH748 4.6 38.2 1.0 NE2 A:HIS79 4.6 21.0 1.0 O3 A:CIT407 4.6 62.6 1.0 CE1 A:HIS79 4.7 19.8 1.0 O A:HOH782 5.0 42.4 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca405 b:59.1 occ:1.00 O A:HOH669 2.3 38.3 1.0 O A:ALA48 2.4 27.9 1.0 O A:LEU53 2.4 21.1 1.0 O A:HOH540 2.6 26.5 1.0 O A:HOH531 2.6 28.0 1.0 O A:HIS50 2.8 26.4 1.0 C A:ALA48 3.5 26.4 1.0 C A:LEU53 3.6 22.6 1.0 C A:HIS50 3.8 26.7 1.0 CA A:PRO51 4.0 28.0 1.0 N A:LEU53 4.3 24.1 1.0 C A:PRO51 4.3 27.4 1.0 CA A:ALA48 4.3 24.1 1.0 N A:PRO51 4.4 28.8 1.0 C A:LYS49 4.4 29.4 1.0 O A:PRO51 4.4 26.5 1.0 CA A:LEU53 4.5 21.9 1.0 N A:GLY54 4.5 20.8 1.0 N A:HIS50 4.5 26.4 1.0 N A:LYS49 4.5 26.4 1.0 CA A:GLY54 4.6 22.6 1.0 O A:LYS49 4.6 31.3 1.0 CA A:LYS49 4.7 29.6 1.0 CA A:HIS50 4.8 26.0 1.0 CB A:ALA48 4.9 22.8 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:38.5 occ:1.00 OD2 B:ASP110 2.1 26.4 1.0 NE2 B:HIS347 2.2 29.3 1.0 OE2 B:GLU144 2.3 26.7 1.0 O B:HOH418 2.6 37.6 1.0 OE1 B:GLU144 2.7 32.4 1.0 CD B:GLU144 2.8 32.7 1.0 O B:HOH796 2.9 41.2 1.0 CE1 B:HIS347 3.1 33.1 1.0 CG B:ASP110 3.1 18.8 1.0 CD2 B:HIS347 3.3 25.4 1.0 OD1 B:ASP110 3.4 18.6 1.0 ZN B:ZN401 3.5 35.0 1.0 OE1 B:GLU143 4.1 29.2 1.0 ND1 B:HIS347 4.2 30.9 1.0 O B:HOH482 4.3 23.2 1.0 CG B:GLU144 4.3 29.8 1.0 CD1 B:ILE346 4.3 26.6 1.0 CG B:HIS347 4.4 28.9 1.0 CB B:ASP110 4.4 20.1 1.0 NE2 B:HIS79 4.5 22.7 1.0 O3 A:CIT406 4.6 64.7 1.0 CE1 B:HIS79 4.6 23.3 1.0 CG1 B:VAL83 5.0 24.5 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:61.3 occ:1.00 O B:THR317 2.3 20.6 1.0 O4 B:PG4415 2.5 42.4 1.0 O B:HOH779 2.5 45.7 1.0 OG1 B:THR317 2.6 20.8 1.0 O3 B:PG4415 2.7 47.7 1.0 O2 B:PG4415 2.8 48.7 1.0 O1 B:PG4415 3.1 40.3 1.0 C B:THR317 3.3 20.6 1.0 C7 B:PG4415 3.4 47.1 1.0 C5 B:PG4415 3.4 43.9 1.0 C8 B:PG4415 3.5 44.1 1.0 C2 B:PG4415 3.5 44.8 1.0 C6 B:PG4415 3.5 42.9 1.0 C4 B:PG4415 3.5 49.2 1.0 C3 B:PG4415 3.6 50.5 1.0 C1 B:PG4415 3.6 40.9 1.0 CB B:THR317 3.7 19.4 1.0 CA B:THR317 3.8 19.1 1.0 N B:THR317 3.8 16.7 1.0 N B:ILE318 4.4 20.2 1.0 O B:HOH500 4.7 25.7 1.0 CA B:ILE318 4.9 19.5 1.0 CG2 B:THR317 4.9 15.6 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:65.9 occ:1.00 O B:ALA48 2.3 35.3 1.0 O B:LEU53 2.4 27.8 1.0 O B:HOH658 2.4 37.0 1.0 O B:HIS50 2.6 33.8 1.0 O B:HOH722 2.7 43.8 1.0 O B:HOH545 2.7 33.6 1.0 C B:LEU53 3.5 27.4 1.0 C B:ALA48 3.5 33.5 1.0 C B:HIS50 3.6 33.7 1.0 CA B:PRO51 4.0 35.9 1.0 N B:LEU53 4.1 31.3 1.0 C B:PRO51 4.2 34.0 1.0 N B:PRO51 4.3 35.8 1.0 O B:PRO51 4.3 34.8 1.0 CA B:ALA48 4.3 31.8 1.0 CA B:LEU53 4.3 28.3 1.0 C B:LYS49 4.4 35.3 1.0 N B:HIS50 4.4 33.6 1.0 N B:GLY54 4.5 27.7 1.0 N B:LYS49 4.5 34.5 1.0 O B:LYS49 4.6 35.9 1.0 CA B:HIS50 4.6 32.7 1.0 CA B:GLY54 4.7 27.8 1.0 CA B:LYS49 4.7 36.8 1.0 CB B:LEU53 4.8 26.9 1.0 O B:HOH697 4.8 37.2 1.0 CB B:ALA48 4.9 31.6 1.0 N B:LYS52 4.9 31.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.