Calcium in PDB 3s6p: Crystal Structure of Helicoverpa Armigera Stunt Virus

Protein crystallography data

The structure of Crystal Structure of Helicoverpa Armigera Stunt Virus, PDB code: 3s6p was solved by J.A.Speir, Z.Chen, D.J.Taylor, J.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 404.120, 405.570, 406.040, 119.20, 114.44, 94.79
R / Rfree (%) 23.7 / n/a

Other elements in 3s6p:

The structure of Crystal Structure of Helicoverpa Armigera Stunt Virus also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Helicoverpa Armigera Stunt Virus (pdb code 3s6p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Helicoverpa Armigera Stunt Virus, PDB code: 3s6p:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3s6p

Go back to Calcium Binding Sites List in 3s6p
Calcium binding site 1 out of 2 in the Crystal Structure of Helicoverpa Armigera Stunt Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Helicoverpa Armigera Stunt Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca576

b:62.7
occ:1.00
OD1 B:ASN466 3.4 31.5 1.0
OD1 A:ASN466 3.5 27.5 1.0
OD1 C:ASN466 3.5 30.3 1.0
ND2 B:ASN466 3.6 31.3 1.0
ND2 C:ASN466 3.7 26.2 1.0
ND2 A:ASN466 3.8 27.6 1.0
O B:HOH645 3.8 30.7 1.0
CG B:ASN466 3.9 29.9 1.0
CG2 B:VAL468 3.9 21.1 1.0
CG2 C:VAL468 4.0 22.6 1.0
CG C:ASN466 4.1 27.3 1.0
CG A:ASN466 4.1 26.7 1.0
OE1 C:GLN470 4.1 36.7 1.0
CG2 A:VAL468 4.3 24.7 1.0
OE1 B:GLN470 4.3 34.3 1.0
OE1 A:GLN470 4.4 36.0 1.0
CD B:GLN470 4.6 32.8 1.0
CD C:GLN470 4.6 36.3 1.0
CD A:GLN470 4.7 34.0 1.0
NE2 B:GLN470 4.7 34.2 1.0
NE2 A:GLN470 4.8 35.3 1.0
NE2 C:GLN470 4.9 36.5 1.0

Calcium binding site 2 out of 2 in 3s6p

Go back to Calcium Binding Sites List in 3s6p
Calcium binding site 2 out of 2 in the Crystal Structure of Helicoverpa Armigera Stunt Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Helicoverpa Armigera Stunt Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca576

b:95.3
occ:1.00
O B:HOH645 2.7 30.7 1.0
OE1 B:GLN505 4.0 53.2 1.0
O B:HOH584 4.2 64.8 1.0
OE1 C:GLN505 4.3 50.9 1.0
OE1 C:GLN470 4.4 36.7 1.0
OE1 B:GLN470 4.5 34.3 1.0
NE2 C:GLN470 4.5 36.5 1.0
NE2 A:GLN505 4.6 52.9 1.0
OE1 A:GLN470 4.7 36.0 1.0
NE2 A:GLN470 4.7 35.3 1.0
NE2 B:GLN470 4.8 34.2 1.0
CD C:GLN470 4.9 36.3 1.0

Reference:

J.A.Speir, P.Natarajan, D.J.Taylor, Z.Chen, J.E.Johnson. Crystal Structure of Helicoverpa Armigera Stunt Virus To Be Published.
Page generated: Sat Dec 12 04:29:32 2020

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