Calcium in PDB 3sh5: Calcium-Bound Laminin G Like Domain 3 From Human Perlecan

The structure of Calcium-Bound Laminin G Like Domain 3 From Human Perlecan, PDB code: 3sh5 was solved by B.Van Le, K.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.356, 48.638, 79.367, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / 30.1

The binding sites of Calcium atom in the Calcium-Bound Laminin G Like Domain 3 From Human Perlecan (pdb code 3sh5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Calcium-Bound Laminin G Like Domain 3 From Human Perlecan, PDB code: 3sh5:

Calcium binding site 1 out of 1 in the Calcium-Bound Laminin G Like Domain 3 From Human Perlecan


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Bound Laminin G Like Domain 3 From Human Perlecan within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca196 b:24.2 occ:1.00 O A:LEU79 2.3 16.6 1.0 OD2 A:ASP62 2.4 18.2 1.0 O A:ALA129 2.8 19.5 1.0 OD1 A:ASN131 2.8 21.9 1.0 O A:HOH216 3.1 19.9 1.0 O A:HOH217 3.1 31.6 1.0 C A:LEU79 3.3 15.5 1.0 CG A:ASP62 3.3 17.5 1.0 OD1 A:ASP62 3.6 16.5 1.0 OD1 A:ASN127 3.8 21.1 1.0 C A:ALA129 3.9 19.4 1.0 CG A:ASN131 3.9 23.2 1.0 CA A:LEU79 4.2 15.2 1.0 N A:GLY80 4.2 15.3 1.0 N A:ASN131 4.3 22.0 1.0 CA A:GLY80 4.3 15.5 1.0 CB A:ASN131 4.4 22.8 1.0 N A:ALA129 4.6 19.4 1.0 CA A:ALA129 4.6 19.3 1.0 CB A:ASP62 4.7 16.7 1.0 CG A:ASN127 4.7 18.1 1.0 CB A:LEU79 4.8 15.3 1.0 CB A:ALA129 4.8 19.5 1.0 N A:VAL130 4.8 19.8 1.0 CB A:ASN127 4.9 17.8 1.0 CA A:VAL130 4.9 20.4 1.0 ND2 A:ASN131 5.0 21.1 1.0

B.Van Le, H.Kim, J.Choi, J.H.Kim, M.J.Hahn, C.Lee, K.K.Kim, H.Y.Hwang. Crystal Structure of the LG3 Domain of Endorepellin, An Angiogenesis Inhibitor. J.Mol.Biol. V. 414 231 2011.
ISSN: ISSN 0022-2836
PubMed: 21996443
DOI: 10.1016/J.JMB.2011.09.048