Calcium in PDB 3sjs: Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form

The structure of Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form, PDB code: 3sjs was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.29 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	46.250, 68.290, 130.890, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 22.1

The binding sites of Calcium atom in the Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form (pdb code 3sjs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form, PDB code: 3sjs:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca221 b:28.7 occ:1.00 O A:THR67 2.3 20.5 1.0 OD1 A:ASP63 2.4 19.3 1.0 OG A:SER65 2.4 20.4 1.0 OD1 A:ASP61 2.4 20.6 1.0 OE1 A:GLU69 2.5 30.8 1.0 OE2 A:GLU72 2.5 19.3 1.0 OE1 A:GLU72 2.8 27.1 1.0 CD A:GLU72 3.0 23.1 1.0 CG A:ASP63 3.5 24.7 1.0 C A:THR67 3.5 21.6 1.0 CG A:ASP61 3.5 22.9 1.0 CB A:SER65 3.6 22.9 1.0 CD A:GLU69 3.6 32.5 1.0 OD2 A:ASP63 3.9 30.2 1.0 N A:SER65 4.0 22.6 1.0 OE2 A:GLU69 4.1 34.4 1.0 OD2 A:ASP61 4.2 22.6 1.0 CA A:LEU68 4.2 20.8 1.0 OG1 A:THR67 4.2 21.5 1.0 N A:ASP63 4.2 25.5 1.0 N A:THR67 4.3 22.2 1.0 N A:LEU68 4.3 20.8 1.0 CA A:ASP61 4.3 24.0 1.0 CA A:SER65 4.3 23.2 1.0 CB A:ASP61 4.4 23.6 1.0 CA A:THR67 4.5 21.4 1.0 C A:ASP61 4.5 25.8 1.0 CG A:GLU72 4.5 20.8 1.0 N A:ARG62 4.6 25.5 1.0 CB A:ASP63 4.7 25.4 1.0 CD2 A:LEU68 4.7 18.4 1.0 N A:GLU69 4.7 22.4 1.0 N A:GLY66 4.8 23.2 1.0 CA A:ASP63 4.8 25.7 1.0 N A:ARG64 4.8 24.8 1.0 C A:SER65 4.9 23.4 1.0 C A:ASP63 4.9 25.5 1.0 C A:LEU68 4.9 21.4 1.0 CG A:GLU69 4.9 29.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica, (D127A,N129A) Mutant, Native Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca222 b:49.3 occ:1.00 OD1 A:ASP97 2.2 25.7 1.0 OD1 A:ASP99 2.3 39.8 1.0 O A:HIS103 2.4 27.8 1.0 O A:HOH278 2.4 22.5 1.0 OD1 A:ASN101 2.5 33.9 1.0 CG A:ASP97 3.3 23.6 1.0 CG A:ASN101 3.4 34.2 1.0 OE1 A:GLU108 3.4 16.0 1.0 CG A:ASP99 3.4 35.9 1.0 C A:HIS103 3.5 28.3 1.0 ND2 A:ASN101 3.8 39.1 1.0 OD2 A:ASP99 3.9 41.3 1.0 OE2 A:GLU108 4.0 19.8 1.0 CA A:ASP97 4.0 21.0 1.0 CB A:ASP97 4.1 21.5 1.0 CD A:GLU108 4.1 17.5 1.0 OD2 A:ASP97 4.2 25.7 1.0 N A:HIS103 4.2 30.9 1.0 N A:ASN101 4.2 33.1 1.0 N A:ASP99 4.2 28.5 1.0 C A:ASP97 4.3 22.2 1.0 CA A:HIS103 4.3 30.4 1.0 N A:THR98 4.4 23.5 1.0 N A:ILE104 4.5 25.6 1.0 O A:HOH276 4.5 18.4 1.0 CB A:ASN101 4.5 35.2 1.0 CB A:HIS103 4.5 32.6 1.0 CA A:ILE104 4.6 23.5 1.0 N A:PHE100 4.6 30.7 1.0 CB A:ASP99 4.6 32.5 1.0 CA A:ASP99 4.7 31.2 1.0 C A:ASP99 4.8 31.6 1.0 CA A:ASN101 4.8 34.3 1.0 O A:ASP97 4.9 21.7 1.0 N A:GLY102 4.9 32.5 1.0 N A:SER105 4.9 21.3 1.0 C A:ASN101 5.0 34.0 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), A.Gardberg, T.Edwards, B.Staker, P.Skubak, C.Gilchrist, L.Stewart. Crystal Structure of URE3-Binding Protein From Entamoeba Histolytica To Be Published.