Atomistry » Calcium » PDB 3s9w-3snz » 3sm3
Atomistry »
  Calcium »
    PDB 3s9w-3snz »
      3sm3 »

Calcium in PDB 3sm3: Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262.

Protein crystallography data

The structure of Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262., PDB code: 3sm3 was solved by S.Vorobiev, H.Neely, J.Seetharaman, A.Snyder, P.Patel, R.Xiao, C.Ciccosanti, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.82 / 2.20
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 51.589, 51.589, 207.028, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 24.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262. (pdb code 3sm3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262., PDB code: 3sm3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3sm3

Go back to Calcium Binding Sites List in 3sm3
Calcium binding site 1 out of 2 in the Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:36.6
occ:0.34
O A:HOH558 2.8 34.4 1.0
O A:HOH505 3.1 33.7 1.0
CD A:ARG171 4.1 26.4 1.0
O4 A:PEG401 4.3 49.6 1.0
NH2 A:ARG154 4.4 31.2 1.0
CB A:ARG171 4.5 33.7 1.0
CA A:GLY176 4.5 36.7 1.0
CG A:ARG171 4.9 32.2 1.0

Calcium binding site 2 out of 2 in 3sm3

Go back to Calcium Binding Sites List in 3sm3
Calcium binding site 2 out of 2 in the Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target MAR262. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:83.1
occ:1.00
OD1 A:ASP172 2.8 39.6 1.0
OE2 A:GLU179 3.0 68.0 1.0
O A:HOH568 3.0 71.2 1.0
CG A:ASP172 4.0 35.5 1.0
CD A:GLU179 4.2 71.9 1.0
CB A:ASP172 4.5 33.8 1.0
CG A:GLU179 4.8 67.2 1.0
OD2 A:ASP172 5.0 42.3 1.0

Reference:

S.Vorobiev, H.Neely, J.Seetharaman, A.Snyder, P.Patel, R.Xiao, C.Ciccosanti, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of Sam-Dependent Methyltransferases Q8PUK2_METMA From Methanosarcina Mazei. To Be Published 2009.
Page generated: Sat Jul 13 19:18:39 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy