Calcium in PDB 3suc: Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12

The structure of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12, PDB code: 3suc was solved by Y.Xiang, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.27 / 2.15
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	95.889, 95.889, 795.391, 90.00, 90.00, 120.00
R / Rfree (%)	26.1 / 29.1

The structure of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 (pdb code 3suc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12, PDB code: 3suc:

Calcium binding site 1 out of 1 in the Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Pre-Mature Bacteriophage PHI29 Gene Product 12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:49.6 occ:1.00 O A:ASN305 2.2 60.0 1.0 OD2 A:ASP279 2.5 66.7 1.0 O A:HOH863 2.5 40.5 1.0 OE2 A:GLU310 2.6 56.1 1.0 OD2 A:ASP280 2.7 57.6 1.0 OD1 A:ASP280 2.8 54.8 1.0 CG A:ASP280 3.1 56.0 1.0 ND2 A:ASN305 3.3 62.9 1.0 C A:ASN305 3.3 60.7 1.0 CG A:ASP279 3.4 66.0 1.0 CB A:ASN305 3.4 63.0 1.0 CD A:GLU310 3.5 52.7 1.0 OD1 A:ASP279 3.6 68.7 1.0 CG A:ASN305 3.7 62.3 1.0 OE1 A:GLU310 3.7 56.2 1.0 ND2 A:ASN307 3.9 52.1 1.0 CA A:ASN305 4.0 63.0 1.0 N A:CYS306 4.5 59.8 1.0 CB A:ASP280 4.6 55.2 1.0 NZ A:LYS335 4.6 56.4 1.0 CB A:ASP279 4.6 64.4 1.0 C A:ASP279 4.6 61.0 1.0 O A:HOH862 4.7 40.0 1.0 MG A:MG857 4.7 47.3 1.0 OD1 A:ASN305 4.7 62.0 1.0 O A:ASP279 4.7 60.4 1.0 N A:ASN307 4.8 52.0 1.0 CG A:ASN307 4.8 48.7 1.0 N A:ASN305 4.9 66.6 1.0 CA A:CYS306 4.9 58.1 1.0 CG A:GLU310 4.9 48.3 1.0 CA A:ASP279 4.9 64.1 1.0 N A:ASP280 4.9 59.3 1.0

Y.Xiang, P.G Leiman, L.Li, S.Grimes, D.L.Anderson, M.G.Rossmann. Crystallographic Insights Into the Autocatalytic Assembly Mechanism of A Bacteriophage Tail Spike Mol.Cell V. 34 375 2009.
ISSN: ISSN 1097-2765
PubMed: 19450535
DOI: 10.1016/J.MOLCEL.2009.04.009