Calcium in PDB 3tpq: Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins

The structure of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins, PDB code: 3tpq was solved by H.Hirano, Y.Matsuura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.70 / 3.45
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	180.737, 180.737, 382.279, 90.00, 90.00, 120.00
R / Rfree (%)	22.4 / 27.3

The binding sites of Calcium atom in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins (pdb code 3tpq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins, PDB code: 3tpq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1378 b:0.5 occ:1.00 O1B A:ATP1377 2.2 0.0 1.0 O1G A:ATP1377 2.4 0.9 1.0 PB A:ATP1377 3.5 0.3 1.0 PG A:ATP1377 3.6 0.4 1.0 OE1 A:GLN137 3.8 0.1 1.0 OD2 A:ASP11 3.9 0.9 1.0 OD1 A:ASP11 3.9 0.8 1.0 O3B A:ATP1377 4.0 96.3 1.0 OD1 A:ASP154 4.0 0.8 1.0 O3G A:ATP1377 4.0 0.0 1.0 CD A:GLN137 4.1 0.6 1.0 CA A:GLY13 4.1 0.8 1.0 NZ A:LYS18 4.2 0.7 1.0 CG A:ASP11 4.3 0.4 1.0 O2A A:ATP1377 4.4 0.0 1.0 O3A A:ATP1377 4.5 88.4 1.0 O2B A:ATP1377 4.5 81.9 1.0 CG A:GLN137 4.5 0.9 1.0 NE2 A:GLN137 4.6 0.2 1.0 N A:GLY13 4.7 0.9 1.0 O A:ASN12 4.9 0.9 1.0 PA A:ATP1377 4.9 0.5 1.0 CE A:LYS18 4.9 0.6 1.0 O2G A:ATP1377 4.9 84.1 1.0 CG A:ASP154 5.0 0.6 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1378 b:81.9 occ:1.00 O1B B:ATP1377 2.0 88.7 1.0 O1G B:ATP1377 2.2 87.5 1.0 PB B:ATP1377 3.4 93.8 1.0 PG B:ATP1377 3.4 97.0 1.0 OE1 B:GLN137 3.5 0.6 1.0 O3B B:ATP1377 3.8 91.8 1.0 O3G B:ATP1377 3.9 95.4 1.0 OD1 B:ASP154 4.0 0.9 1.0 NZ B:LYS18 4.0 0.3 1.0 CD B:GLN137 4.0 0.5 1.0 O2A B:ATP1377 4.1 78.5 1.0 CA B:GLY13 4.2 0.7 1.0 OD2 B:ASP11 4.2 0.6 1.0 O3A B:ATP1377 4.2 97.6 1.0 OD1 B:ASP11 4.5 0.8 1.0 NE2 B:GLN137 4.5 0.3 1.0 PA B:ATP1377 4.6 97.5 1.0 O2B B:ATP1377 4.6 74.2 1.0 CG B:GLN137 4.7 0.7 1.0 O2G B:ATP1377 4.7 87.3 1.0 CG B:ASP11 4.8 0.0 1.0 CE B:LYS18 4.8 0.4 1.0 CG B:ASP154 4.9 0.6 1.0 O B:ASN12 4.9 0.2 1.0 O1A B:ATP1377 4.9 1.0 1.0 N B:GLY13 4.9 0.8 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1378 b:0.7 occ:1.00 O1G C:ATP1377 2.3 0.8 1.0 O1B C:ATP1377 2.3 0.5 1.0 PG C:ATP1377 3.5 0.0 1.0 PB C:ATP1377 3.6 0.4 1.0 OE1 C:GLN137 3.8 0.2 1.0 O3G C:ATP1377 4.0 0.2 1.0 OD2 C:ASP11 4.0 0.4 1.0 O3B C:ATP1377 4.0 0.3 1.0 CA C:GLY13 4.0 0.6 1.0 OD1 C:ASP11 4.1 0.6 1.0 CD C:GLN137 4.1 0.5 1.0 O2A C:ATP1377 4.4 0.2 1.0 OD1 C:ASP154 4.4 0.4 1.0 CG C:ASP11 4.5 0.3 1.0 O3A C:ATP1377 4.5 0.2 1.0 NZ C:LYS18 4.5 0.6 1.0 NE2 C:GLN137 4.6 0.8 1.0 CG C:GLN137 4.6 96.0 1.0 N C:GLY13 4.8 1.0 1.0 O2G C:ATP1377 4.8 0.4 1.0 O C:ASN12 4.8 0.6 1.0 O2B C:ATP1377 4.8 99.6 1.0 PA C:ATP1377 4.9 0.0 1.0 CG2 C:VAL339 4.9 0.7 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1378 b:0.4 occ:1.00 O1G D:ATP1377 2.2 0.7 1.0 O1B D:ATP1377 2.2 0.7 1.0 PG D:ATP1377 3.5 0.8 1.0 PB D:ATP1377 3.6 96.3 1.0 OE1 D:GLN137 3.7 0.4 1.0 OD1 D:ASP154 4.0 0.0 1.0 O3B D:ATP1377 4.0 99.8 1.0 O2A D:ATP1377 4.0 98.6 1.0 O3G D:ATP1377 4.1 1.0 1.0 CD D:GLN137 4.1 0.1 1.0 OD2 D:ASP11 4.1 0.5 1.0 CA D:GLY13 4.2 0.0 1.0 NZ D:LYS18 4.2 0.9 1.0 OD1 D:ASP11 4.4 0.1 1.0 O3A D:ATP1377 4.4 84.3 1.0 CG D:GLN137 4.5 0.1 1.0 O2B D:ATP1377 4.7 76.9 1.0 PA D:ATP1377 4.7 94.0 1.0 CG D:ASP11 4.7 0.7 1.0 NE2 D:GLN137 4.7 0.8 1.0 OD2 D:ASP154 4.7 0.8 1.0 O2G D:ATP1377 4.7 0.5 1.0 CG D:ASP154 4.8 0.6 1.0 CG2 D:VAL339 4.8 0.6 1.0 N D:GLY13 4.9 0.9 1.0 CB D:GLN137 4.9 0.1 1.0 CE D:LYS18 5.0 0.2 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Wild-Type Mal Rpel Domain in Complex with Five G- Actins within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1378 b:0.2 occ:1.00 O1G E:ATP1377 1.9 0.6 1.0 O1B E:ATP1377 2.3 0.3 1.0 PG E:ATP1377 3.2 0.6 1.0 PB E:ATP1377 3.5 0.4 1.0 O3B E:ATP1377 3.7 0.9 1.0 OE1 E:GLN137 3.8 0.5 1.0 OD1 E:ASP154 3.9 0.9 1.0 O3G E:ATP1377 4.0 0.4 1.0 O2A E:ATP1377 4.0 0.9 1.0 CD E:GLN137 4.1 0.2 1.0 O3A E:ATP1377 4.2 0.1 1.0 O2G E:ATP1377 4.3 0.3 1.0 OD2 E:ASP154 4.4 0.5 1.0 CG E:GLN137 4.4 0.9 1.0 CG E:ASP154 4.6 1.0 1.0 OD1 E:ASP11 4.6 0.0 1.0 CA E:GLY13 4.6 0.7 1.0 CG2 E:VAL339 4.6 0.6 1.0 NZ E:LYS18 4.6 0.6 1.0 CA E:GLY156 4.6 0.9 1.0 OD2 E:ASP11 4.7 0.6 1.0 PA E:ATP1377 4.7 0.9 1.0 NE2 E:GLN137 4.8 0.3 1.0 CB E:GLN137 4.8 0.2 1.0 O2B E:ATP1377 4.9 0.7 1.0 N E:GLY156 5.0 0.1 1.0

H.Hirano, Y.Matsuura. Sensing Actin Dynamics: Structural Basis For G-Actin-Sensitive Nuclear Import of Mal Biochem.Biophys.Res.Commun. V. 414 373 2011.
ISSN: ISSN 0006-291X
PubMed: 21964294
DOI: 10.1016/J.BBRC.2011.09.079