Atomistry » Calcium » PDB 3ti4-3tvc » 3tqu
Atomistry »
  Calcium »
    PDB 3ti4-3tvc »
      3tqu »

Calcium in PDB 3tqu: Structure of A HAM1 Protein From Coxiella Burnetii

Enzymatic activity of Structure of A HAM1 Protein From Coxiella Burnetii

All present enzymatic activity of Structure of A HAM1 Protein From Coxiella Burnetii:
3.6.1.19;

Protein crystallography data

The structure of Structure of A HAM1 Protein From Coxiella Burnetii, PDB code: 3tqu was solved by J.Cheung, M.C.Franklin, M.Rudolph, M.Cassidy, E.Gary, F.Burshteyn, J.Love, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.75 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.528, 86.737, 105.794, 90.00, 92.49, 90.00
R / Rfree (%) 20 / 24.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of A HAM1 Protein From Coxiella Burnetii (pdb code 3tqu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Structure of A HAM1 Protein From Coxiella Burnetii, PDB code: 3tqu:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 3tqu

Go back to Calcium Binding Sites List in 3tqu
Calcium binding site 1 out of 5 in the Structure of A HAM1 Protein From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A HAM1 Protein From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:17.4
occ:1.00
O A:HOH245 2.5 18.8 1.0
OD1 A:ASP69 2.6 14.5 1.0
O A:HOH215 2.6 12.8 0.7
O A:HOH449 2.6 21.6 0.7
O A:HOH934 2.6 21.6 0.6
O A:HOH421 2.7 40.5 1.0
OE1 A:GLU41 2.7 29.4 1.0
OE2 A:GLU41 2.8 24.5 1.0
CD A:GLU41 3.1 25.3 1.0
O A:HOH941 3.3 27.7 1.0
CG A:ASP69 3.5 13.8 1.0
O A:HOH250 3.9 14.5 0.7
OD2 A:ASP69 4.0 15.0 1.0
O A:HOH420 4.4 25.7 0.8
O A:HOH872 4.5 38.3 1.0
NZ A:LYS53 4.5 13.1 1.0
O A:HOH220 4.5 14.8 1.0
CG A:GLU41 4.6 21.5 1.0
O A:HOH942 4.6 41.4 1.0
CB A:ASP69 4.6 9.0 1.0
O A:SER70 4.7 13.1 1.0
N A:SER70 4.9 11.1 1.0
CA A:ASP69 4.9 11.3 1.0

Calcium binding site 2 out of 5 in 3tqu

Go back to Calcium Binding Sites List in 3tqu
Calcium binding site 2 out of 5 in the Structure of A HAM1 Protein From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A HAM1 Protein From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:51.4
occ:1.00
O B:HOH1011 2.3 24.2 1.0
OD1 B:ASP69 2.6 10.5 1.0
O B:HOH1212 2.9 50.1 1.0
O B:HOH839 3.1 34.7 1.0
OE1 B:GLU41 3.1 45.3 1.0
OE2 B:GLU41 3.1 47.1 1.0
O B:HOH378 3.5 20.0 1.0
CD B:GLU41 3.5 43.9 1.0
CG B:ASP69 3.7 14.0 1.0
OG B:SER86 3.8 37.0 1.0
O B:HOH1123 4.2 41.3 1.0
O B:HOH1019 4.2 33.7 1.0
O B:HOH219 4.2 11.2 0.8
NZ B:LYS53 4.3 19.8 1.0
OD2 B:ASP69 4.3 12.3 1.0
CB B:ASP69 4.7 11.1 1.0
CB B:SER86 4.7 36.9 1.0
O B:SER70 4.7 7.2 1.0
CA B:ASP69 4.7 10.0 1.0
N B:SER70 4.8 9.6 1.0

Calcium binding site 3 out of 5 in 3tqu

Go back to Calcium Binding Sites List in 3tqu
Calcium binding site 3 out of 5 in the Structure of A HAM1 Protein From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A HAM1 Protein From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca201

b:61.4
occ:1.00
OD1 C:ASP69 2.7 12.8 1.0
O C:HOH835 2.7 11.2 1.0
O C:HOH1012 2.7 36.2 1.0
OE1 C:GLU41 2.8 40.6 1.0
OE2 C:GLU41 2.9 30.9 1.0
O C:HOH389 3.1 18.0 1.0
CD C:GLU41 3.2 33.8 1.0
CG C:ASP69 3.6 13.3 1.0
O C:HOH459 3.9 28.6 0.8
OD2 C:ASP69 4.0 12.4 1.0
OG C:SER86 4.0 34.8 1.0
O C:HOH234 4.3 29.4 1.0
NZ C:LYS53 4.4 22.9 1.0
O C:HOH741 4.5 36.4 0.9
CG C:GLU41 4.6 32.4 1.0
CB C:ASP69 4.7 11.3 1.0
O C:HOH1033 4.7 34.3 0.9
CB C:SER86 5.0 31.8 1.0

Calcium binding site 4 out of 5 in 3tqu

Go back to Calcium Binding Sites List in 3tqu
Calcium binding site 4 out of 5 in the Structure of A HAM1 Protein From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of A HAM1 Protein From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:23.5
occ:1.00
OD1 D:ASP69 2.4 10.3 1.0
O D:HOH573 2.4 39.2 1.0
O D:HOH247 2.5 14.5 0.9
O D:HOH397 2.7 48.5 1.0
O D:HOH890 2.7 35.9 1.0
OE2 D:GLU41 2.8 32.4 1.0
OE1 D:GLU41 2.8 35.5 1.0
CD D:GLU41 3.2 31.6 1.0
O D:HOH1022 3.2 50.1 1.0
CG D:ASP69 3.5 9.0 1.0
O D:HOH274 3.8 23.1 1.0
OD2 D:ASP69 4.0 12.5 1.0
O D:HOH935 4.1 43.4 1.0
NZ D:LYS53 4.4 19.2 1.0
O D:HOH217 4.5 17.6 1.0
O D:HOH807 4.5 42.7 0.9
O D:SER70 4.6 10.3 1.0
CB D:ASP69 4.6 8.8 1.0
CG D:GLU41 4.7 26.9 1.0
O D:HOH851 4.7 29.9 0.8
N D:SER70 4.8 11.2 1.0
CA D:ASP69 4.8 9.7 1.0
O D:HOH443 4.8 25.6 0.9
OG D:SER86 4.9 29.4 1.0

Calcium binding site 5 out of 5 in 3tqu

Go back to Calcium Binding Sites List in 3tqu
Calcium binding site 5 out of 5 in the Structure of A HAM1 Protein From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of A HAM1 Protein From Coxiella Burnetii within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca202

b:51.9
occ:1.00
O D:HOH682 2.6 35.1 1.0
O D:HOH215 2.8 13.7 1.0
O C:HOH907 2.9 50.2 1.0
O C:HOH1107 2.9 49.4 1.0
O D:HOH242 3.0 24.3 1.0
O D:HOH351 3.5 34.3 1.0
O D:ALA132 4.1 15.1 1.0
O D:HOH1133 4.7 41.9 1.0
OD2 D:ASP130 4.8 17.3 1.0
OD1 D:ASP130 5.0 15.9 1.0

Reference:

M.C.Franklin, J.Cheung, M.J.Rudolph, F.Burshteyn, M.Cassidy, E.Gary, B.Hillerich, Z.K.Yao, P.R.Carlier, M.Totrov, J.D.Love. Structural Genomics For Drug Design Against the Pathogen Coxiella Burnetii. Proteins V. 83 2124 2015.
ISSN: ISSN 0887-3585
PubMed: 26033498
DOI: 10.1002/PROT.24841
Page generated: Sat Dec 12 04:31:58 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy