Calcium in PDB 3u1w: Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution

The structure of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution, PDB code: 3u1w was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.99 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	119.258, 152.840, 165.691, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 21.5

The structure of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

11 atoms

The binding sites of Calcium atom in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution (pdb code 3u1w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution, PDB code: 3u1w:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca279 b:49.0 occ:1.00 O A:HOH1116 2.0 51.6 1.0 O A:HOH1117 2.4 46.0 1.0 OD1 A:ASN275 2.4 28.0 1.0 O A:HOH631 2.5 44.5 1.0 O A:HOH1122 2.5 51.8 1.0 O A:HOH1123 2.7 56.8 1.0 CG A:ASN275 3.6 28.5 1.0 O A:HOH965 3.9 42.9 1.0 O A:HOH751 4.1 43.6 1.0 ND2 A:ASN275 4.3 27.6 1.0 O A:GLY274 4.4 25.5 1.0 O A:HOH1065 4.5 51.4 1.0 O A:HOH518 4.5 28.5 1.0 O A:HOH485 4.5 33.9 1.0 CB A:ASN275 4.7 28.3 1.0 CA A:ASN275 4.8 27.5 1.0 C A:GLY274 4.9 25.5 1.0 O A:PHE273 5.0 26.3 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca280 b:45.5 occ:1.00 O B:HOH1114 2.2 54.7 1.0 OD1 B:ASN275 2.3 35.8 1.0 O B:HOH1115 2.4 41.5 1.0 O B:HOH956 2.5 47.8 1.0 O B:HOH1113 2.7 37.1 1.0 O B:HOH1035 3.4 61.8 1.0 CG B:ASN275 3.5 35.2 1.0 ND2 B:ASN275 4.2 34.5 1.0 O B:GLY274 4.3 32.7 1.0 O B:HOH948 4.5 51.6 1.0 O B:HOH754 4.5 39.2 1.0 CB B:ASN275 4.6 33.4 1.0 O B:HOH353 4.7 30.8 1.0 CA B:ASN275 4.7 32.7 1.0 C B:GLY274 4.8 32.3 1.0 O B:PHE273 4.8 33.5 1.0 O B:HOH456 4.9 32.9 1.0 O B:HOH895 4.9 44.4 1.0 N B:ASN275 5.0 32.4 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca278 b:41.2 occ:1.00 O C:HOH1112 2.1 49.5 1.0 O C:HOH1111 2.2 51.5 1.0 OD1 C:ASN275 2.4 32.2 1.0 O C:HOH1121 2.4 46.4 1.0 O C:HOH1109 2.4 33.3 1.0 O C:HOH748 2.5 37.8 1.0 O C:HOH1110 2.6 28.9 1.0 CG C:ASN275 3.6 30.8 1.0 O C:GLY274 4.2 25.5 1.0 ND2 C:ASN275 4.3 30.4 1.0 O C:HOH753 4.4 42.6 1.0 O C:HOH737 4.6 28.9 1.0 CB C:ASN275 4.7 29.3 1.0 O C:HOH364 4.7 24.8 1.0 C C:GLY274 4.7 27.2 1.0 CA C:ASN275 4.7 28.1 1.0 O C:HOH313 4.8 22.9 1.0 O C:PHE273 4.8 29.4 1.0 N C:ASN275 5.0 27.4 1.0 O C:HOH752 5.0 36.1 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Calcium Binding Protein (BDI_1975) From Parabacteroides Distasonis Atcc 8503 at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca281 b:44.2 occ:1.00 O C:HOH466 2.3 36.5 1.0 OD2 C:ASP63 2.4 26.2 1.0 O C:HOH469 2.4 33.8 1.0 O C:HOH467 2.5 63.9 1.0 O C:HOH930 2.5 49.9 1.0 O C:HOH468 2.7 53.4 1.0 CG C:ASP63 3.4 26.0 1.0 OD1 C:ASP63 3.7 26.9 1.0 O C:HOH694 4.0 36.4 1.0 O C:HOH780 4.1 48.1 1.0 O C:HOH781 4.2 37.3 1.0 O C:HOH430 4.3 36.7 1.0 OE2 C:GLU56 4.5 35.0 1.0 O C:HOH521 4.7 39.0 1.0 CB C:ASP63 4.8 24.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.