Atomistry » Calcium » PDB 3tz1-3uiq » 3u24
Atomistry »
  Calcium »
    PDB 3tz1-3uiq »
      3u24 »

Calcium in PDB 3u24: The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.

Protein crystallography data

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24 was solved by M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.37 / 2.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.427, 96.427, 133.947, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 20

Other elements in 3u24:

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. also contains other interesting chemical elements:

Zinc (Zn) 11 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. (pdb code 3u24). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 1 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:68.1
occ:1.00
O A:HOH963 2.3 55.2 1.0
OE2 A:GLU508 2.4 41.3 1.0
O A:HOH964 2.5 64.3 1.0
OE1 A:GLU508 2.7 38.6 1.0
CD A:GLU508 3.0 36.9 1.0
CG A:GLU508 4.5 33.9 1.0
NE1 A:TRP530 4.7 25.9 1.0

Calcium binding site 2 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 2 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca604

b:67.5
occ:1.00
O A:HOH940 2.2 62.3 1.0
OD1 A:ASP517 2.3 51.1 1.0
O A:HOH941 2.5 55.0 1.0
O A:HOH938 2.6 42.2 1.0
CG A:ASP517 3.1 48.5 1.0
OD2 A:ASP517 3.2 52.5 1.0
O A:HOH939 3.6 56.0 1.0
CE A:MSE516 4.5 47.5 1.0
CB A:ASP517 4.6 43.9 1.0
CB A:MSE516 4.7 37.9 1.0

Calcium binding site 3 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 3 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:75.4
occ:1.00
OD2 A:ASP77 3.2 31.3 1.0
O A:HOH677 3.7 27.1 1.0
CG A:ASP77 4.2 29.1 1.0
O A:HOH859 4.3 30.7 1.0
OD1 A:ASP77 4.5 29.3 1.0
CD1 A:ILE75 4.7 28.4 1.0
CB A:ALA79 4.8 26.2 1.0
O A:HOH840 5.0 37.9 1.0

Reference:

M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak. The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. To Be Published.
Page generated: Sat Jul 13 19:58:06 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy