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Calcium in PDB 3u24: The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.

Protein crystallography data

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24 was solved by M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.37 / 2.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.427, 96.427, 133.947, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 20

Other elements in 3u24:

The structure of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. also contains other interesting chemical elements:

Zinc (Zn) 11 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. (pdb code 3u24). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis., PDB code: 3u24:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 1 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:68.1
occ:1.00
O A:HOH963 2.3 55.2 1.0
OE2 A:GLU508 2.4 41.3 1.0
O A:HOH964 2.5 64.3 1.0
OE1 A:GLU508 2.7 38.6 1.0
CD A:GLU508 3.0 36.9 1.0
CG A:GLU508 4.5 33.9 1.0
NE1 A:TRP530 4.7 25.9 1.0

Calcium binding site 2 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 2 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca604

b:67.5
occ:1.00
O A:HOH940 2.2 62.3 1.0
OD1 A:ASP517 2.3 51.1 1.0
O A:HOH941 2.5 55.0 1.0
O A:HOH938 2.6 42.2 1.0
CG A:ASP517 3.1 48.5 1.0
OD2 A:ASP517 3.2 52.5 1.0
O A:HOH939 3.6 56.0 1.0
CE A:MSE516 4.5 47.5 1.0
CB A:ASP517 4.6 43.9 1.0
CB A:MSE516 4.7 37.9 1.0

Calcium binding site 3 out of 3 in 3u24

Go back to Calcium Binding Sites List in 3u24
Calcium binding site 3 out of 3 in the The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:75.4
occ:1.00
OD2 A:ASP77 3.2 31.3 1.0
O A:HOH677 3.7 27.1 1.0
CG A:ASP77 4.2 29.1 1.0
O A:HOH859 4.3 30.7 1.0
OD1 A:ASP77 4.5 29.3 1.0
CD1 A:ILE75 4.7 28.4 1.0
CB A:ALA79 4.8 26.2 1.0
O A:HOH840 5.0 37.9 1.0

Reference:

M.E.Cuff, C.Hatzos-Skintges, J.Bearden, A.Joachimiak. The Structure of A Putative Lipoprotein of Unknown Function From Shewanella Oneidensis. To Be Published.
Page generated: Sat Dec 12 04:32:21 2020

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