Calcium in PDB 3u4a: From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis

The structure of From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis, PDB code: 3u4a was solved by R.P.Mcandrew, J.I.Park, W.Reindl, G.D.Friedland, P.D'haeseleer, T.Northen, K.L.Sale, B.A.Simmons, P.D.Adams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.68 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	121.748, 121.748, 242.816, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 22.2

The binding sites of Calcium atom in the From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis (pdb code 3u4a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis, PDB code: 3u4a:

Calcium binding site 1 out of 1 in the From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of From Soil to Structure: A Novel Dimeric Family 3-Beta-Glucosidase Isolated From Compost Using Metagenomic Analysis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca778 b:79.1 occ:1.00 OD1 A:ASP664 2.7 45.7 1.0 O A:HOH801 2.7 34.6 1.0 O A:HOH983 2.8 50.9 1.0 O A:HOH854 2.9 50.7 1.0 O A:VAL666 2.9 42.5 1.0 O A:GLU713 3.2 42.7 1.0 O A:PRO714 3.5 36.2 1.0 CG A:ASP664 3.5 41.0 1.0 OD2 A:ASP664 3.7 39.7 1.0 CA A:GLY715 3.7 40.4 1.0 CZ A:PHE717 3.8 34.5 1.0 C A:PRO714 3.8 39.1 1.0 N A:GLY715 3.9 40.1 1.0 CE1 A:PHE717 4.0 39.4 1.0 C A:GLU713 4.0 42.0 1.0 C A:GLY715 4.1 40.9 1.0 C A:VAL666 4.1 40.5 1.0 O A:GLU716 4.1 39.0 1.0 N A:GLU716 4.3 40.4 1.0 CE2 A:PHE717 4.3 32.9 1.0 CB A:GLU713 4.4 40.1 1.0 O A:HOH868 4.5 46.3 1.0 N A:VAL666 4.6 36.6 1.0 O A:GLY715 4.7 40.8 1.0 CD1 A:PHE717 4.7 37.8 1.0 CA A:GLU713 4.7 40.7 1.0 O A:HOH919 4.8 42.5 1.0 N A:PRO714 4.8 39.4 1.0 CA A:PRO714 4.8 39.5 1.0 CA A:VAL666 4.9 32.7 1.0 CB A:ASP664 4.9 36.6 1.0 C A:GLU716 4.9 40.4 1.0

R.P.Mcandrew, J.I.Park, W.Reindl, G.D.Friedland, P.D'haeseleer, T.Northen, K.L.Sale, B.A.Simmons, P.D.Adams. From Soil to Structure: A Novel Dimeric Family 3-Beta--Glucosidase Isolated From Compost Using Metagenomic Analysis To Be Published.