Atomistry » Calcium » PDB 3ttb-3ue5 » 3u4x
Atomistry »
  Calcium »
    PDB 3ttb-3ue5 »
      3u4x »

Calcium in PDB 3u4x: Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose

Protein crystallography data

The structure of Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose, PDB code: 3u4x was solved by B.A.M.Rocha, C.S.Teixeira, T.R.Moura, H.C.Silva, F.N.Pereira-Junior, C.S.Nagano, P.Delatorre, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.51 / 2.16
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.940, 66.780, 107.700, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.7

Other elements in 3u4x:

The structure of Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose also contains other interesting chemical elements:

Bromine (Br) 1 atom
Manganese (Mn) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose (pdb code 3u4x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose, PDB code: 3u4x:

Calcium binding site 1 out of 1 in 3u4x

Go back to Calcium Binding Sites List in 3u4x
Calcium binding site 1 out of 1 in the Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Lectin From Camptosema Pedicellatum Seeds in Complex with 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca237

b:17.1
occ:1.00
OD2 A:ASP19 2.2 10.4 1.0
O A:HOH252 2.3 28.8 1.0
O A:TYR12 2.4 14.2 1.0
OD1 A:ASN14 2.4 11.1 1.0
O A:HOH241 2.4 28.5 1.0
OD1 A:ASP10 2.5 7.3 1.0
OD2 A:ASP10 2.6 6.7 1.0
CG A:ASP10 2.9 8.9 1.0
CG A:ASP19 3.4 15.9 1.0
CG A:ASN14 3.6 17.6 1.0
C A:TYR12 3.6 14.6 1.0
N A:ASN14 3.9 17.0 1.0
OD1 A:ASP19 3.9 14.4 1.0
MN A:MN238 4.1 12.1 1.0
CB A:ASN14 4.2 16.2 1.0
CB A:ASP10 4.4 7.9 1.0
CA A:TYR12 4.5 14.0 1.0
N A:TYR12 4.5 13.6 1.0
O A:HOH249 4.5 26.3 1.0
CE1 A:HIS24 4.5 8.3 1.0
CA A:PRO13 4.6 16.6 1.0
C A:PRO13 4.6 17.6 1.0
N A:PRO13 4.6 16.3 1.0
O A:ASP207 4.6 6.3 1.0
O A:ARG227 4.7 14.3 1.0
CB A:ASP19 4.7 16.6 1.0
ND2 A:ASN14 4.7 18.4 1.0
CA A:ASN14 4.7 17.3 1.0
CB A:TYR12 4.7 14.2 1.0
CB A:ARG227 4.7 14.7 1.0
OD1 A:ASP207 4.8 12.4 1.0
CD2 A:TYR12 4.8 16.2 1.0
CA A:ARG227 4.8 14.1 1.0

Reference:

C.Souza Teixeira, H.Colares Da Silva, T.Rocha De Moura, F.N.Pereira-Junior, K.Santiago Do Nascimento, C.Shiniti Nagano, A.Holanda Sampaio, P.Delatorre, B.A.Matias Rocha, B.Sousa Cavada. Crystal Structure of the Lectin of Camptosema Pedicellatum: Implications of A Conservative Substitution at the Hydrophobic Subsite. J.Biochem. V. 152 87 2012.
ISSN: ISSN 0021-924X
PubMed: 22554687
DOI: 10.1093/JB/MVS047
Page generated: Sat Dec 12 04:32:30 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy