Calcium in PDB 3u7z: Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution

The structure of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution, PDB code: 3u7z was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.50 / 1.30
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	29.685, 30.474, 47.156, 73.13, 83.79, 89.30
R / Rfree (%)	13.8 / 18.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution (pdb code 3u7z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution, PDB code: 3u7z:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca132 b:12.4 occ:1.00 OE2 B:GLU75 2.4 13.9 1.0 O A:HOH217 2.4 29.8 1.0 O B:HOH170 2.4 17.0 1.0 OD2 A:ASP73 2.5 16.9 1.0 O A:HOH197 2.5 20.2 1.0 OD1 A:ASP73 2.6 11.4 1.0 CG A:ASP73 2.8 10.9 1.0 CD B:GLU75 3.4 16.9 1.0 OE1 B:GLU75 3.8 23.8 1.0 O B:HOH152 4.0 9.5 1.0 CA A:CA133 4.1 8.7 1.0 CB A:ASP73 4.2 10.1 1.0 O1 A:EDO147 4.4 26.8 1.0 OD1 A:ASN70 4.7 11.2 1.0 CG B:GLU75 4.7 15.8 1.0 ND2 A:ASN70 4.7 14.8 1.0 O A:HOH271 4.8 32.9 1.0 C1 A:EDO147 5.0 15.9 1.0

Calcium binding site 2 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca133 b:8.7 occ:1.00 OD1 A:ASN70 2.4 11.2 1.0 O A:VAL72 2.4 8.7 1.0 OD1 A:ASP73 2.4 11.4 1.0 O B:HOH152 2.4 9.5 1.0 OE1 A:GLU67 2.5 10.4 1.0 OE2 A:GLU67 2.5 10.3 1.0 CD A:GLU67 2.9 9.0 1.0 CG A:ASN70 3.5 11.0 1.0 C A:VAL72 3.5 8.0 1.0 CG A:ASP73 3.5 10.9 1.0 CA A:ASP73 3.7 7.8 1.0 O B:SER76 3.8 8.8 1.0 N A:ASP73 4.0 7.3 1.0 CA A:CA132 4.1 12.4 1.0 ND2 A:ASN70 4.2 14.8 1.0 CB A:ASP73 4.2 10.1 1.0 OE2 B:GLU75 4.2 13.9 1.0 O B:HOH155 4.3 11.3 1.0 C1 A:EDO147 4.3 15.9 1.0 CG A:GLU67 4.4 9.7 1.0 CB A:ASN70 4.5 10.3 1.0 CA A:ASN70 4.5 11.3 1.0 OD2 A:ASP73 4.6 16.9 1.0 C B:SER76 4.7 8.0 1.0 OG B:SER76 4.7 10.9 1.0 CA B:GLY77 4.7 8.3 1.0 CA A:VAL72 4.8 7.7 1.0 N A:VAL72 4.9 8.8 1.0 C A:ASN70 4.9 11.6 1.0 C A:ASP73 4.9 9.4 1.0

Calcium binding site 3 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca136 b:13.6 occ:0.50 O A:HOH193 2.3 23.3 1.0 OE2 A:GLU54 2.4 17.3 0.5 O A:HOH189 2.5 21.2 1.0 CD A:GLU54 3.3 23.2 0.5 OE1 A:GLU54 3.6 28.5 0.5 OE1 A:GLU54 4.1 26.7 0.5 OE2 A:GLU54 4.4 32.4 0.5 CD A:GLU54 4.5 26.9 0.5 CG A:GLU54 4.6 20.1 0.5 O A:HOH284 4.6 30.1 1.0 OD1 A:ASP56 4.6 25.5 1.0 O A:HOH226 4.7 23.0 1.0 OD2 A:ASP56 4.7 26.5 1.0 O A:HOH264 4.9 35.0 1.0

Calcium binding site 4 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca138 b:22.8 occ:0.50 OD1 A:ASP87 2.2 13.3 1.0 O A:HOH317 2.5 32.5 0.7 O A:HOH215 2.6 26.0 1.0 CG A:ASP87 3.4 11.8 1.0 O A:HOH239 3.7 28.9 1.0 O A:HOH250 4.1 27.8 1.0 OD2 A:ASP87 4.1 13.6 1.0 O A:HOH262 4.2 30.6 1.0 OE1 A:GLU88 4.3 29.9 1.0 O A:HOH317 4.4 24.5 0.3 CB A:ASP87 4.5 10.1 1.0 CA A:ASP87 4.5 8.6 1.0 CD A:GLU88 4.5 23.9 1.0 CZ A:PHE53 4.5 16.1 1.0 CG A:GLU88 4.6 15.9 1.0 O A:ASP87 4.6 9.4 1.0 C A:ASP87 4.6 8.7 1.0 CE1 A:PHE53 4.8 17.0 1.0 O A:HOH198 5.0 23.7 1.0

Calcium binding site 5 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca139 b:19.6 occ:0.50 CA A:CA139 0.0 19.6 0.5 CA A:CA139 1.4 14.6 0.3 OD2 A:ASP119 2.2 17.8 1.0 CG A:ASP119 3.4 13.4 1.0 CA A:CA140 3.7 41.0 0.7 CB A:ASP119 4.0 12.3 1.0 OD1 A:ASP119 4.4 15.7 1.0 O A:HOH230 4.8 38.5 1.0 CA A:CA140 4.9 11.7 0.3

Calcium binding site 6 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca139 b:14.6 occ:0.30 CA A:CA139 0.0 14.6 0.3 CA A:CA139 1.4 19.6 0.5 OD2 A:ASP119 2.4 17.8 1.0 CG A:ASP119 3.5 13.4 1.0 CB A:ASP119 3.9 12.3 1.0 O A:HOH230 4.4 38.5 1.0 OD1 A:ASP119 4.5 15.7 1.0 CA A:CA140 4.9 41.0 0.7 O A:ASP119 4.9 14.4 1.0

Calcium binding site 7 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca140 b:41.0 occ:0.70 CA A:CA140 0.0 41.0 0.7 CA A:CA140 1.6 11.7 0.3 O A:GLU36 2.9 22.1 1.0 OD2 A:ASP119 3.5 17.8 1.0 CA A:CA139 3.7 19.6 0.5 CG A:ASP119 3.9 13.4 1.0 OD1 A:ASP119 4.1 15.7 1.0 C A:GLU36 4.1 22.1 1.0 NE2 A:HIS38 4.1 22.2 1.0 CD2 A:HIS38 4.2 19.9 1.0 CB A:ASP119 4.6 12.3 1.0 CA A:LYS37 4.8 14.8 1.0 CA A:CA139 4.9 14.6 0.3 N A:LYS37 4.9 18.4 1.0

Calcium binding site 8 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca140 b:11.7 occ:0.30 CA A:CA140 0.0 11.7 0.3 CA A:CA140 1.6 41.0 0.7 O A:GLU36 2.2 22.1 1.0 C A:GLU36 3.3 22.1 1.0 N A:GLU36 3.9 28.5 1.0 CA A:GLU36 4.1 25.5 1.0 N A:LYS37 4.4 18.4 1.0 C A:GLY35 4.6 30.2 1.0 CB A:GLU36 4.6 26.6 1.0 CA A:LYS37 4.7 14.8 1.0 OD2 A:ASP119 4.8 17.8 1.0 NE2 A:HIS38 4.8 22.2 1.0 CG A:ASP119 4.9 13.4 1.0 CA A:CA139 4.9 19.6 0.5 CA A:GLY35 5.0 33.5 1.0

Calcium binding site 9 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca134 b:8.7 occ:1.00 OXT B:TYR131 2.5 9.1 1.0 O B:TYR131 2.7 10.4 1.0 C B:TYR131 2.9 9.2 1.0 O B:HOH154 4.3 10.6 1.0 CA B:TYR131 4.4 8.8 1.0

Calcium binding site 10 out of 14 in the Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of A Putative Metal Binding Protein RUMGNA_00854 (ZP_02040092.1) From Ruminococcus Gnavus Atcc 29149 at 1.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca135 b:18.8 occ:0.50 O B:HOH240 1.9 27.6 1.0 O B:HOH281 2.2 36.4 1.0 OD2 B:ASP56 2.3 26.8 1.0 O B:ASP56 2.4 24.1 1.0 O B:HOH299 2.7 40.9 1.0 O B:HOH304 2.8 36.3 1.0 CG B:ASP56 3.2 25.0 1.0 O B:HOH263 3.3 21.7 0.7 C B:ASP56 3.4 20.6 1.0 O B:HOH263 3.7 14.5 0.3 CB B:ASP56 3.9 18.8 1.0 OD1 B:ASP56 3.9 31.6 1.0 N B:THR57 4.2 19.2 1.0 CA B:ASP56 4.2 19.0 1.0 CA B:THR57 4.5 21.7 1.0 O B:HOH285 4.8 33.1 1.0 N B:ASP56 4.9 18.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.