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Calcium in PDB 3uji: Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide

Protein crystallography data

The structure of Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide, PDB code: 3uji was solved by X.P.Kong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.351, 73.097, 88.662, 90.00, 121.98, 90.00
R / Rfree (%) 16.1 / 19.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide (pdb code 3uji). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide, PDB code: 3uji:

Calcium binding site 1 out of 1 in 3uji

Go back to Calcium Binding Sites List in 3uji
Calcium binding site 1 out of 1 in the Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Anti-Hiv-1 V3 Fab 2558 in Complex with Mn Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca209

b:17.1
occ:1.00
O L:HOH210 3.1 10.3 1.0
CB L:ALA80 4.0 11.1 1.0
N L:ALA80 4.9 8.7 1.0

Reference:

M.K.Gorny, J.Sampson, H.Li, X.Jiang, M.Totrov, X.H.Wang, C.Williams, T.O'neal, B.Volsky, L.Li, T.Cardozo, P.Nyambi, S.Zolla-Pazner, X.P.Kong. Human Anti-V3 Hiv-1 Monoclonal Antibodies Encoded By the VH5-51/Vl Lambda Genes Define A Conserved Antigenic Structure. Plos One V. 6 27780 2011.
ISSN: ESSN 1932-6203
PubMed: 22164215
DOI: 10.1371/JOURNAL.PONE.0027780
Page generated: Tue Jul 8 17:15:39 2025

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