Calcium in PDB 3ukg: Crystal Structure of RAP1/Dna Complex

The structure of Crystal Structure of RAP1/Dna Complex, PDB code: 3ukg was solved by B.Matot, Y.-V.Le Bihan, S.Gasparini, M.H.Ledu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.93 / 2.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.595, 102.944, 116.755, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 26.5

The binding sites of Calcium atom in the Crystal Structure of RAP1/Dna Complex (pdb code 3ukg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of RAP1/Dna Complex, PDB code: 3ukg:

Calcium binding site 1 out of 1 in the Crystal Structure of RAP1/Dna Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of RAP1/Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:94.0 occ:1.00 OE2 A:GLU506 2.2 0.1 1.0 CD A:GLU506 2.7 0.6 1.0 OE1 A:GLU506 3.1 0.5 1.0 CA A:PRO503 3.2 76.0 1.0 N A:GLY504 3.3 68.0 1.0 C A:PRO503 3.7 74.5 1.0 CG A:GLU506 3.8 84.8 1.0 CB A:PRO503 3.8 81.7 1.0 NE2 A:HIS501 3.9 95.6 1.0 O A:VAL502 4.1 77.7 1.0 N A:PRO503 4.2 79.3 1.0 CA A:GLY477 4.3 0.1 1.0 CD2 A:HIS501 4.5 99.8 1.0 CA A:GLY504 4.5 64.8 1.0 C A:VAL502 4.5 82.5 1.0 N A:SER505 4.9 64.6 1.0 O A:PRO503 5.0 74.9 1.0 CE1 A:HIS501 5.0 92.5 1.0

B.Matot, Y.V.Le Bihan, R.Lescasse, J.Perez, S.Miron, G.David, B.Castaing, P.Weber, B.Raynal, S.Zinn-Justin, S.Gasparini, M.H.Le Du. The Orientation of the C-Terminal Domain of the Saccharomyces Cerevisiae RAP1 Protein Is Determined By Its Binding to Dna. Nucleic Acids Res. V. 40 3197 2012.
ISSN: ISSN 0305-1048
PubMed: 22139930
DOI: 10.1093/NAR/GKR1166