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Calcium in PDB 3ung: Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex

Protein crystallography data

The structure of Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex, PDB code: 3ung was solved by A.I.Cocozaki, N.F.Ramia, Y.Shao, C.R.Hale, R.M.Terns, M.P.Terns, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.61 / 2.31
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.167, 85.070, 140.087, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 26.4

Other elements in 3ung:

The structure of Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex (pdb code 3ung). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex, PDB code: 3ung:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3ung

Go back to Calcium Binding Sites List in 3ung
Calcium binding site 1 out of 2 in the Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca901

b:85.2
occ:1.00
OD2 C:ASP673 2.6 75.5 1.0
O1B C:ADP904 2.9 0.4 1.0
OD1 C:ASP674 2.9 95.7 1.0
OD2 C:ASP674 3.0 79.9 1.0
OD1 C:ASP600 3.1 90.4 1.0
O C:HOH1001 3.2 55.4 1.0
CG C:ASP674 3.3 80.1 1.0
CG C:ASP673 3.4 74.3 1.0
OD1 C:ASP673 3.4 71.4 1.0
CA C:CA902 3.6 86.4 1.0
CG C:ASP600 3.9 79.1 1.0
O3' C:ADP904 4.0 0.0 1.0
OD2 C:ASP600 4.1 97.7 1.0
O1A C:ADP904 4.2 0.8 1.0
PB C:ADP904 4.3 0.8 1.0
C3' C:ADP904 4.4 0.2 1.0
O5' C:ADP904 4.5 0.8 1.0
CB C:ASP674 4.8 65.8 1.0
CB C:ASP673 4.8 61.5 1.0
PA C:ADP904 4.9 0.7 1.0
CB C:ASP600 5.0 57.8 1.0
O3A C:ADP904 5.0 0.7 1.0

Calcium binding site 2 out of 2 in 3ung

Go back to Calcium Binding Sites List in 3ung
Calcium binding site 2 out of 2 in the Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the CMR2 Subunit of the Crispr Rna Silencing Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca902

b:86.4
occ:1.00
O C:GLY601 2.7 82.1 1.0
O C:HOH1035 2.8 70.3 1.0
OD1 C:ASP600 2.8 90.4 1.0
OD1 C:ASP673 3.0 71.4 1.0
O C:HOH1001 3.0 55.4 1.0
OD2 C:ASP600 3.2 97.7 1.0
CG C:ASP600 3.4 79.1 1.0
CA C:CA901 3.6 85.2 1.0
C C:GLY601 3.8 54.6 1.0
O1B C:ADP904 4.0 0.4 1.0
CG C:ASP673 4.1 74.3 1.0
O C:HOH1002 4.2 61.3 1.0
N C:GLY601 4.3 59.3 1.0
CA C:GLY601 4.5 61.9 1.0
OD2 C:ASP673 4.5 75.5 1.0
N C:MET604 4.5 0.1 1.0
NZ C:LYS739 4.5 76.3 1.0
N C:ASP603 4.6 85.5 1.0
CB C:MET604 4.7 0.8 1.0
N C:ASP602 4.7 73.2 1.0
CB C:ASP600 4.8 57.8 1.0
CG C:MET604 4.9 0.3 1.0
CA C:ASP602 4.9 81.6 1.0
C C:ASP602 4.9 82.9 1.0
C C:ASP600 4.9 59.0 1.0
PB C:ADP904 5.0 0.8 1.0

Reference:

A.I.Cocozaki, N.F.Ramia, Y.Shao, C.R.Hale, R.M.Terns, M.P.Terns, H.Li. Structure of the CMR2 Subunit of the Crispr-Cas Rna Silencing Complex. Structure V. 20 545 2012.
ISSN: ISSN 0969-2126
PubMed: 22405013
DOI: 10.1016/J.STR.2012.01.018
Page generated: Sat Dec 12 04:33:06 2020

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