Calcium in PDB 3uxf: Structure of the Fimbrial Protein Fimp From Actonomyces Oris

The structure of Structure of the Fimbrial Protein Fimp From Actonomyces Oris, PDB code: 3uxf was solved by K.Persson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.82 / 1.60
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.239, 176.587, 40.119, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 19.6

The binding sites of Calcium atom in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris (pdb code 3uxf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris, PDB code: 3uxf:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Fimbrial Protein Fimp From Actonomyces Oris within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:14.2 occ:1.00 O A:SER390 2.3 15.4 1.0 O A:HOH1191 2.4 18.2 1.0 OD2 A:ASP464 2.5 15.8 1.0 O A:HOH915 2.5 18.3 1.0 OD1 A:ASP464 2.5 14.8 1.0 O A:HOH928 2.5 15.7 1.0 CG A:ASP464 2.8 13.5 1.0 C A:SER390 3.3 18.3 1.0 CA A:SER390 4.1 18.1 1.0 N A:GLY391 4.3 18.0 1.0 O A:HOH1006 4.3 19.4 1.0 CB A:ASP464 4.3 13.4 1.0 O A:HOH1061 4.4 22.2 1.0 CA A:GLY391 4.4 15.0 1.0 CB A:SER390 4.4 19.1 1.0 O A:HOH1151 4.6 31.9 1.0 O A:HOH1271 4.8 29.3 1.0 O A:HOH1272 4.8 29.9 1.0 O A:HOH712 4.9 33.4 1.0

Calcium binding site 2 out of 4 in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Fimbrial Protein Fimp From Actonomyces Oris within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2 b:23.4 occ:1.00 O A:THR403 2.2 24.8 1.0 O A:ASP398 2.4 26.5 1.0 O A:THR401 2.4 32.3 1.0 OD2 A:ASP405 2.4 24.6 1.0 OD2 A:ASP396 2.4 25.8 1.0 OD1 A:ASP396 2.5 20.8 1.0 OG1 A:THR401 2.6 30.5 1.0 CG A:ASP396 2.8 21.7 1.0 C A:THR401 3.2 37.6 1.0 C A:ASP398 3.4 23.1 1.0 C A:THR403 3.4 27.9 1.0 CG A:ASP405 3.5 25.6 1.0 CB A:THR401 3.7 34.7 1.0 CA A:THR401 3.7 31.4 1.0 N A:THR401 3.8 30.9 1.0 N A:THR403 4.1 30.7 1.0 N A:ASP405 4.1 20.2 1.0 CA A:ASP398 4.2 24.1 1.0 CB A:ASP398 4.2 24.3 1.0 N A:GLN402 4.2 38.1 1.0 C A:GLN402 4.2 38.1 1.0 N A:ASP398 4.3 20.0 1.0 OD1 A:ASP405 4.3 29.4 1.0 CA A:THR403 4.3 32.5 1.0 N A:PRO399 4.3 26.6 1.0 CB A:ASP396 4.3 21.4 1.0 N A:VAL404 4.4 30.9 1.0 O A:HOH1245 4.4 32.1 1.0 CB A:ASP405 4.4 19.5 1.0 CA A:VAL404 4.4 26.3 1.0 CA A:PRO399 4.6 28.2 1.0 O A:GLN402 4.6 41.0 1.0 CA A:GLN402 4.7 42.7 1.0 CG2 A:THR401 4.7 35.9 1.0 C A:VAL404 4.7 25.4 1.0 O A:HOH853 4.7 39.8 1.0 CG A:ASP398 4.7 32.4 1.0 C A:PRO399 4.8 36.5 1.0 CB A:THR403 4.8 30.8 1.0 CA A:ASP405 4.9 19.1 1.0 N A:SER400 4.9 34.1 1.0

Calcium binding site 3 out of 4 in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Fimbrial Protein Fimp From Actonomyces Oris within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca3 b:14.4 occ:1.00 O A:THR136 2.4 13.7 1.0 O A:ASP133 2.4 14.7 1.0 O A:HOH962 2.4 17.9 1.0 O A:HOH972 2.4 23.7 1.0 O A:HOH792 2.4 22.0 1.0 O A:HOH803 2.5 14.7 1.0 OD1 A:ASP133 2.5 16.9 1.0 C A:ASP133 3.4 15.3 1.0 CG A:ASP133 3.4 17.6 1.0 C A:THR136 3.6 13.7 1.0 CA A:ASP133 3.9 14.2 1.0 CA A:GLU137 4.1 15.3 1.0 OD2 A:ASP133 4.1 21.2 1.0 OG1 A:THR46 4.2 13.8 1.0 CB A:ASP133 4.3 15.2 1.0 O A:HOH958 4.3 30.6 1.0 N A:GLU137 4.3 14.6 1.0 CB A:GLU137 4.5 17.1 1.0 N A:ALA134 4.5 14.1 1.0 N A:THR136 4.6 13.5 1.0 O A:HOH686 4.6 27.7 1.0 CA A:THR136 4.7 13.1 1.0 O A:ALA44 4.7 15.5 1.0 N A:THR46 4.7 13.2 1.0 O A:HOH908 4.8 17.7 1.0 O A:HOH992 4.8 24.8 1.0 CA A:ALA134 4.8 14.9 1.0 OG1 A:THR136 4.9 13.5 1.0 C A:ALA134 5.0 15.3 1.0

Calcium binding site 4 out of 4 in the Structure of the Fimbrial Protein Fimp From Actonomyces Oris


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Fimbrial Protein Fimp From Actonomyces Oris within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca492 b:36.6 occ:1.00 O A:ASN330 2.4 20.4 1.0 OD2 A:ASP150 2.5 26.4 1.0 O A:HOH936 2.6 27.8 1.0 OD1 A:ASP150 2.9 21.6 1.0 O A:HOH801 2.9 42.7 1.0 CG A:ASP150 3.1 24.0 1.0 C A:ASN330 3.5 17.7 1.0 CB A:ASN330 4.0 22.6 1.0 CA A:ASN330 4.1 19.4 1.0 CB A:ASP150 4.6 19.7 1.0 O A:HOH917 4.6 21.7 1.0 N A:PHE331 4.6 18.5 1.0 O A:HOH1172 4.7 25.9 1.0 ND2 A:ASN330 4.7 20.0 1.0 OG1 A:THR332 4.8 24.0 1.0 N A:THR332 4.8 18.3 1.0 CA A:PHE331 4.9 16.2 1.0 CG A:ASN330 4.9 21.1 1.0 O A:HOH519 5.0 33.6 1.0

K.Persson, A.Esberg, R.Claesson, N.Stromberg. The Pilin Protein Fimp From Actinomyces Oris: Crystal Structure and Sequence Analyses. Plos One V. 7 48364 2012.
ISSN: ESSN 1932-6203
PubMed: 23118994
DOI: 10.1371/JOURNAL.PONE.0048364