Calcium in PDB 3v65: Crystal Structure of Agrin and LRP4 Complex

The structure of Crystal Structure of Agrin and LRP4 Complex, PDB code: 3v65 was solved by Y.Zong, R.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.00 / 3.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	83.720, 110.230, 158.110, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 29.7

The binding sites of Calcium atom in the Crystal Structure of Agrin and LRP4 Complex (pdb code 3v65). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Agrin and LRP4 Complex, PDB code: 3v65:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Agrin and LRP4 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Agrin and LRP4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:99.0 occ:1.00 O A:LEU1837 2.4 61.2 1.0 O A:GLN1887 2.6 56.9 1.0 OD2 A:ASP1820 3.0 82.1 1.0 OD2 A:ASP1889 3.5 73.3 1.0 OD1 A:ASP1889 3.5 69.5 1.0 C A:GLN1887 3.6 56.6 1.0 CG A:ASP1889 3.6 69.6 1.0 C A:LEU1837 3.6 59.6 1.0 CB A:GLN1887 3.7 66.6 1.0 N A:GLN1887 3.8 57.4 1.0 CA A:GLN1887 3.9 60.1 1.0 CG A:ASP1820 4.2 83.7 1.0 CG A:GLN1887 4.3 75.8 1.0 CB A:ALA1885 4.4 57.7 1.0 CA A:LEU1837 4.5 56.6 1.0 CB A:LEU1837 4.6 55.4 1.0 N A:GLY1838 4.6 63.9 1.0 CB A:ASP1889 4.6 71.4 1.0 N A:THR1886 4.6 59.7 1.0 OD1 A:ASP1820 4.7 88.0 1.0 CA A:GLY1838 4.7 64.8 1.0 N A:ASP1889 4.8 67.4 1.0 N A:LEU1888 4.8 56.4 1.0 CA A:ALA1885 4.9 57.9 1.0 C A:THR1886 5.0 55.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Agrin and LRP4 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Agrin and LRP4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2001 b:0.0 occ:1.00 O C:LEU1837 3.0 0.5 1.0 CB C:ALA1885 3.7 1.0 1.0 CA C:ALA1885 4.0 0.9 1.0 C C:LEU1837 4.2 0.6 1.0 CG C:GLN1887 4.2 0.2 1.0 CB C:GLN1887 4.2 0.8 1.0 CA C:GLY1838 4.4 0.4 1.0 N C:GLN1887 4.6 0.2 1.0 N C:THR1886 4.7 0.4 1.0 C C:ALA1885 4.7 0.3 1.0 N C:GLY1838 4.8 0.3 1.0 O C:GLY1884 4.8 0.4 1.0 O C:GLN1887 4.8 0.2 1.0 OD2 C:ASP1820 4.9 0.6 1.0 CA C:GLN1887 5.0 0.7 1.0

Y.Zong, B.Zhang, S.Gu, K.Lee, J.Zhou, G.Yao, D.Figueiredo, K.Perry, L.Mei, R.Jin. Structural Basis of Agrin-LRP4-Musk Signaling. Genes Dev. V. 26 247 2012.
ISSN: ISSN 0890-9369
PubMed: 22302937
DOI: 10.1101/GAD.180885.111