Calcium in PDB 3veb: Crystal Structure of Matp-Mats

The structure of Crystal Structure of Matp-Mats, PDB code: 3veb was solved by M.A.Schumacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.08 / 2.80
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.300, 102.300, 193.570, 90.00, 90.00, 120.00
R / Rfree (%)	26.6 / 28.3

The binding sites of Calcium atom in the Crystal Structure of Matp-Mats (pdb code 3veb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Matp-Mats, PDB code: 3veb:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of Matp-Mats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Matp-Mats within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca101 b:0.7 occ:1.00 N2 N:DG5 4.2 59.9 1.0 N3 N:DG5 4.4 56.9 1.0 N3 M:DA14 4.5 56.0 1.0 O4' N:DA6 4.6 72.1 1.0 O4' M:DC15 4.7 85.9 1.0 C2 N:DG5 4.7 56.0 1.0 C2 M:DA14 4.9 57.9 1.0 C4' N:DA6 4.9 67.8 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of Matp-Mats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Matp-Mats within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca102 b:0.2 occ:1.00 N2 N:DG3 3.4 36.1 1.0 N2 M:DG16 3.6 52.4 1.0 N3 M:DG16 3.8 47.9 1.0 N3 N:DG3 3.9 45.4 1.0 C2 M:DG16 4.0 54.6 1.0 C2 N:DG3 4.1 49.1 1.0 O4' N:DT4 4.5 81.5 1.0 C4' N:DT4 4.8 81.3 1.0 C4 M:DG16 4.9 46.1 1.0 C5' N:DT4 5.0 77.9 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of Matp-Mats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Matp-Mats within 5.0Å range: probe atom residue distance (Å) B Occ M:Ca101 b:0.8 occ:1.00 O4' M:DA6 4.2 66.4 1.0 N2 M:DG5 4.3 33.3 1.0 C4' M:DA6 4.3 60.5 1.0 N3 M:DG5 4.3 36.3 1.0 C5' M:DA6 4.4 56.3 1.0 C2 M:DG5 4.8 47.2 1.0 N3 N:DA14 4.9 56.9 1.0

P.Dupaigne, N.K.Tonthat, O.Espeli, T.Whitfill, F.Boccard, M.A.Schumacher. Molecular Basis For A Protein-Mediated Dna-Bridging Mechanism That Functions in Condensation of the E. Coli Chromosome. Mol.Cell V. 48 560 2012.
ISSN: ISSN 1097-2765
PubMed: 23084832
DOI: 10.1016/J.MOLCEL.2012.09.009