Calcium in PDB 3vgi: The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus

The structure of The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus, PDB code: 3vgi was solved by M.Kataoka, H.-W.Kim, K.Ishikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.07
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.014, 118.665, 46.759, 90.00, 90.00, 90.00
R / Rfree (%)	12.7 / 15.8

The binding sites of Calcium atom in the The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus (pdb code 3vgi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus, PDB code: 3vgi:

Calcium binding site 1 out of 1 in the The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Hyperthermophilic Family 12 Endocellulase From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca320 b:9.9 occ:0.80 OE2 A:GLU76 2.3 15.1 1.0 OD1 A:ASP70 2.3 15.9 1.0 O A:ASN74 2.4 10.1 1.0 OD1 A:ASP72 2.4 13.2 1.0 OD2 A:ASP142 2.4 13.7 1.0 OD1 A:ASP68 2.4 12.6 1.0 CG A:ASP72 3.3 14.5 1.0 CG A:ASP70 3.4 16.9 1.0 CD A:GLU76 3.5 10.0 1.0 CG A:ASP142 3.5 13.1 1.0 CG A:ASP68 3.5 12.3 1.0 C A:ASN74 3.5 10.1 1.0 OD2 A:ASP72 3.8 16.6 1.0 OD2 A:ASP70 3.8 20.7 1.0 CB A:ASP142 3.9 10.9 1.0 O A:HOH341 4.1 15.0 1.0 NZ A:LYS69 4.2 21.6 0.5 N A:ASN74 4.2 10.0 1.0 CA A:ASP68 4.2 11.7 1.0 CG A:GLU76 4.3 11.6 1.0 N A:ASP72 4.3 13.8 1.0 CA A:ASN74 4.3 9.6 1.0 CB A:ASP72 4.3 14.1 1.0 OD2 A:ASP68 4.4 15.0 1.0 N A:GLU76 4.4 8.3 1.0 OE1 A:GLU76 4.4 13.4 1.0 CB A:ASP68 4.4 12.4 1.0 N A:PRO75 4.4 9.1 1.0 CA A:PRO75 4.4 8.6 1.0 CB A:ASN74 4.5 10.9 1.0 C A:PRO75 4.5 8.3 1.0 CD A:LYS69 4.5 27.8 0.5 C A:ASP68 4.6 12.6 1.0 N A:ASP70 4.6 15.6 1.0 OD1 A:ASP142 4.6 15.7 1.0 N A:LYS69 4.7 12.9 1.0 CB A:ASP70 4.7 17.9 1.0 CA A:ASP72 4.7 13.4 1.0 N A:GLY71 4.8 15.9 1.0 N A:GLY73 4.9 11.8 1.0 C A:ASP72 4.9 12.4 1.0 CA A:ASP70 5.0 16.1 1.0 CE A:LYS69 5.0 26.6 0.5

H.-W.Kim, M.Kataoka, K.Ishikawa. Atomic Resolution of the Crystal Structure of the Hyperthermophilic Family 12 Endocellulase and Stabilizing Role of the Dxdxdg Calcium-Binding Motif in Pyrococcus Furiosus. Febs Lett. V. 586 1009 2012.
ISSN: ISSN 0014-5793
PubMed: 22569255
DOI: 10.1016/J.FEBSLET.2012.02.029