Calcium in PDB 3vi1: Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
Protein crystallography data
The structure of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6), PDB code: 3vi1
was solved by
K.Matoba,
S.Harada,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.51 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.400,
79.720,
149.000,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21.1 /
22.5
|
Other elements in 3vi1:
The structure of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
(pdb code 3vi1). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6), PDB code: 3vi1:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 1 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:18.3
occ:1.00
|
O
|
A:GLY287
|
2.3
|
17.2
|
1.0
|
|
O
|
A:ARG253
|
2.3
|
16.6
|
1.0
|
|
O
|
A:GLY255
|
2.4
|
17.3
|
1.0
|
|
OD1
|
A:ASP285
|
2.4
|
16.3
|
1.0
|
|
OD1
|
A:ASP290
|
2.5
|
16.2
|
1.0
|
|
OG1
|
A:THR257
|
2.6
|
17.1
|
1.0
|
|
OD2
|
A:ASP285
|
2.8
|
16.7
|
1.0
|
|
CG
|
A:ASP285
|
3.0
|
16.2
|
1.0
|
|
CG
|
A:ASP290
|
3.2
|
16.5
|
1.0
|
|
OD2
|
A:ASP290
|
3.3
|
16.2
|
1.0
|
|
C
|
A:ARG253
|
3.4
|
16.9
|
1.0
|
|
C
|
A:GLY287
|
3.5
|
17.3
|
1.0
|
|
CB
|
A:THR257
|
3.6
|
17.0
|
1.0
|
|
C
|
A:GLY255
|
3.6
|
17.5
|
1.0
|
|
C
|
A:THR254
|
4.0
|
17.5
|
1.0
|
|
N
|
A:THR257
|
4.0
|
17.2
|
1.0
|
|
N
|
A:GLY255
|
4.0
|
17.5
|
1.0
|
|
CB
|
A:ARG253
|
4.2
|
16.5
|
1.0
|
|
N
|
A:THR254
|
4.2
|
17.2
|
1.0
|
|
N
|
A:GLY287
|
4.2
|
17.1
|
1.0
|
|
CA
|
A:THR254
|
4.3
|
17.3
|
1.0
|
|
O
|
A:THR254
|
4.3
|
17.4
|
1.0
|
|
O
|
A:HOH492
|
4.3
|
21.3
|
1.0
|
|
O
|
A:HOH558
|
4.4
|
12.4
|
1.0
|
|
CA
|
A:ARG253
|
4.4
|
16.7
|
1.0
|
|
N
|
A:GLY288
|
4.4
|
17.5
|
1.0
|
|
CA
|
A:GLY288
|
4.4
|
17.6
|
1.0
|
|
CA
|
A:THR257
|
4.4
|
17.1
|
1.0
|
|
CA
|
A:GLY255
|
4.5
|
17.6
|
1.0
|
|
CA
|
A:GLY287
|
4.5
|
17.4
|
1.0
|
|
CB
|
A:ASP285
|
4.5
|
16.1
|
1.0
|
|
N
|
A:ASP256
|
4.6
|
17.6
|
1.0
|
|
CB
|
A:ASP290
|
4.6
|
16.6
|
1.0
|
|
C
|
A:ASP256
|
4.6
|
17.4
|
1.0
|
|
CA
|
A:ASP256
|
4.7
|
17.5
|
1.0
|
|
C
|
A:GLY288
|
4.7
|
17.5
|
1.0
|
|
CG2
|
A:THR257
|
4.7
|
16.9
|
1.0
|
|
O
|
A:GLY288
|
4.9
|
17.3
|
1.0
|
|
N
|
A:ALA286
|
5.0
|
16.5
|
1.0
|
|
Calcium binding site 2 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 2 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:14.8
occ:1.00
|
O
|
A:THR327
|
2.4
|
16.5
|
1.0
|
|
O
|
A:HOH558
|
2.4
|
12.4
|
1.0
|
|
O
|
A:HOH557
|
2.4
|
17.3
|
1.0
|
|
OD2
|
A:ASP290
|
2.4
|
16.2
|
1.0
|
|
O
|
A:GLY288
|
2.4
|
17.3
|
1.0
|
|
OE1
|
A:GLU329
|
2.6
|
16.5
|
1.0
|
|
OE2
|
A:GLU329
|
2.8
|
17.0
|
1.0
|
|
CD
|
A:GLU329
|
3.1
|
16.7
|
1.0
|
|
CG
|
A:ASP290
|
3.4
|
16.5
|
1.0
|
|
C
|
A:GLY288
|
3.5
|
17.5
|
1.0
|
|
C
|
A:THR327
|
3.6
|
16.4
|
1.0
|
|
C
|
A:GLY287
|
4.0
|
17.3
|
1.0
|
|
N
|
A:GLY288
|
4.1
|
17.5
|
1.0
|
|
CB
|
A:ASP290
|
4.1
|
16.6
|
1.0
|
|
O
|
A:HOH486
|
4.2
|
11.3
|
1.0
|
|
N
|
A:ASP290
|
4.2
|
17.0
|
1.0
|
|
O
|
A:GLY287
|
4.2
|
17.2
|
1.0
|
|
O
|
A:HOH525
|
4.3
|
25.5
|
1.0
|
|
OD1
|
A:ASP290
|
4.3
|
16.2
|
1.0
|
|
OD1
|
A:ASP285
|
4.4
|
16.3
|
1.0
|
|
CA
|
A:GLY288
|
4.4
|
17.6
|
1.0
|
|
CB
|
A:THR327
|
4.4
|
16.8
|
1.0
|
|
N
|
A:VAL328
|
4.5
|
16.3
|
1.0
|
|
CA
|
A:GLY287
|
4.5
|
17.4
|
1.0
|
|
N
|
A:ASN289
|
4.5
|
17.6
|
1.0
|
|
CA
|
A:THR327
|
4.5
|
16.6
|
1.0
|
|
CA
|
A:VAL328
|
4.5
|
16.2
|
1.0
|
|
CG
|
A:GLU329
|
4.6
|
16.6
|
1.0
|
|
CA
|
A:ASN289
|
4.6
|
17.6
|
1.0
|
|
C
|
A:ASN289
|
4.8
|
17.3
|
1.0
|
|
N
|
A:GLU329
|
4.8
|
16.3
|
1.0
|
|
CA
|
A:ASP290
|
4.8
|
16.8
|
1.0
|
|
CG2
|
A:THR327
|
4.9
|
16.8
|
1.0
|
|
N
|
A:THR327
|
4.9
|
16.6
|
1.0
|
|
Calcium binding site 3 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 3 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:18.7
occ:1.00
|
O
|
A:GLY351
|
2.3
|
18.4
|
1.0
|
|
O
|
A:ALA353
|
2.4
|
19.3
|
1.0
|
|
O
|
A:GLY336
|
2.4
|
20.6
|
1.0
|
|
O
|
A:GLY334
|
2.4
|
19.9
|
1.0
|
|
OD1
|
A:ASP356
|
2.5
|
20.2
|
1.0
|
|
OD2
|
A:ASP338
|
2.5
|
20.6
|
1.0
|
|
OD2
|
A:ASP356
|
3.1
|
20.1
|
1.0
|
|
CG
|
A:ASP356
|
3.1
|
20.0
|
1.0
|
|
CG
|
A:ASP338
|
3.4
|
20.6
|
1.0
|
|
C
|
A:GLY351
|
3.5
|
18.4
|
1.0
|
|
C
|
A:GLY334
|
3.5
|
19.9
|
1.0
|
|
C
|
A:ALA353
|
3.6
|
19.6
|
1.0
|
|
C
|
A:GLY336
|
3.6
|
20.8
|
1.0
|
|
CB
|
A:ASP338
|
4.0
|
20.4
|
1.0
|
|
C
|
A:GLY352
|
4.0
|
19.3
|
1.0
|
|
N
|
A:GLY336
|
4.0
|
20.8
|
1.0
|
|
C
|
A:SER335
|
4.1
|
20.8
|
1.0
|
|
N
|
A:ALA353
|
4.1
|
19.5
|
1.0
|
|
N
|
A:ASP338
|
4.1
|
20.6
|
1.0
|
|
N
|
A:GLY334
|
4.1
|
19.1
|
1.0
|
|
OD1
|
A:ASP338
|
4.2
|
21.1
|
1.0
|
|
O
|
A:GLY352
|
4.3
|
19.3
|
1.0
|
|
N
|
A:GLY352
|
4.3
|
18.6
|
1.0
|
|
N
|
A:SER335
|
4.3
|
20.4
|
1.0
|
|
CA
|
A:GLY352
|
4.4
|
19.0
|
1.0
|
|
CA
|
A:GLY351
|
4.4
|
18.1
|
1.0
|
|
CA
|
A:SER335
|
4.4
|
20.8
|
1.0
|
|
CA
|
A:GLY336
|
4.4
|
20.9
|
1.0
|
|
O
|
A:SER335
|
4.4
|
21.0
|
1.0
|
|
CA
|
A:GLY334
|
4.4
|
19.6
|
1.0
|
|
CA
|
A:ALA353
|
4.5
|
19.7
|
1.0
|
|
C
|
A:GLY333
|
4.5
|
18.7
|
1.0
|
|
O
|
A:HOH560
|
4.5
|
23.1
|
1.0
|
|
N
|
A:GLY354
|
4.5
|
19.8
|
1.0
|
|
N
|
A:SER337
|
4.6
|
20.9
|
1.0
|
|
CB
|
A:ASP356
|
4.6
|
19.7
|
1.0
|
|
CA
|
A:GLY354
|
4.6
|
20.0
|
1.0
|
|
CA
|
A:SER337
|
4.7
|
20.9
|
1.0
|
|
CA
|
A:ASP338
|
4.7
|
20.4
|
1.0
|
|
O
|
A:GLY354
|
4.8
|
19.8
|
1.0
|
|
CA
|
A:GLY333
|
4.8
|
18.2
|
1.0
|
|
C
|
A:GLY354
|
4.8
|
19.9
|
1.0
|
|
C
|
A:SER337
|
4.8
|
20.7
|
1.0
|
|
CA
|
A:CA504
|
4.8
|
20.2
|
1.0
|
|
Calcium binding site 4 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 4 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:20.2
occ:1.00
|
O
|
A:GLY352
|
2.4
|
19.3
|
1.0
|
|
O
|
A:ALA371
|
2.4
|
20.8
|
1.0
|
|
OD2
|
A:ASP356
|
2.4
|
20.1
|
1.0
|
|
OD1
|
A:ASP374
|
2.4
|
19.5
|
1.0
|
|
O
|
A:GLY354
|
2.5
|
19.8
|
1.0
|
|
O
|
A:GLY369
|
2.5
|
20.3
|
1.0
|
|
OD2
|
A:ASP374
|
3.0
|
19.4
|
1.0
|
|
CG
|
A:ASP374
|
3.1
|
19.6
|
1.0
|
|
CG
|
A:ASP356
|
3.5
|
20.0
|
1.0
|
|
C
|
A:GLY352
|
3.5
|
19.3
|
1.0
|
|
C
|
A:GLY369
|
3.6
|
20.2
|
1.0
|
|
C
|
A:ALA371
|
3.6
|
20.9
|
1.0
|
|
C
|
A:GLY354
|
3.6
|
19.9
|
1.0
|
|
C
|
A:ALA353
|
3.8
|
19.6
|
1.0
|
|
O
|
A:ALA353
|
3.9
|
19.3
|
1.0
|
|
C
|
A:GLY370
|
3.9
|
20.8
|
1.0
|
|
N
|
A:ALA371
|
4.0
|
20.9
|
1.0
|
|
N
|
A:GLY354
|
4.0
|
19.8
|
1.0
|
|
CA
|
A:GLY370
|
4.2
|
20.6
|
1.0
|
|
CB
|
A:ASP356
|
4.2
|
19.7
|
1.0
|
|
CA
|
A:ALA353
|
4.2
|
19.7
|
1.0
|
|
N
|
A:ASP356
|
4.2
|
19.9
|
1.0
|
|
O
|
A:GLY370
|
4.2
|
20.7
|
1.0
|
|
N
|
A:GLY370
|
4.3
|
20.4
|
1.0
|
|
N
|
A:ALA353
|
4.3
|
19.5
|
1.0
|
|
N
|
A:GLY352
|
4.3
|
18.6
|
1.0
|
|
C
|
A:GLY351
|
4.3
|
18.4
|
1.0
|
|
CA
|
A:ALA371
|
4.4
|
21.1
|
1.0
|
|
CA
|
A:GLY354
|
4.4
|
20.0
|
1.0
|
|
OD1
|
A:ASP356
|
4.4
|
20.2
|
1.0
|
|
N
|
A:GLY372
|
4.5
|
21.0
|
1.0
|
|
CA
|
A:GLY352
|
4.5
|
19.0
|
1.0
|
|
CB
|
A:ASP374
|
4.6
|
19.6
|
1.0
|
|
CA
|
A:GLY369
|
4.6
|
20.0
|
1.0
|
|
O
|
A:GLY351
|
4.6
|
18.4
|
1.0
|
|
N
|
A:ASN355
|
4.6
|
20.1
|
1.0
|
|
CA
|
A:GLY372
|
4.6
|
20.8
|
1.0
|
|
O
|
A:GLY372
|
4.7
|
20.5
|
1.0
|
|
CA
|
A:GLY351
|
4.7
|
18.1
|
1.0
|
|
CA
|
A:CA505
|
4.7
|
17.8
|
1.0
|
|
CA
|
A:ASN355
|
4.8
|
20.1
|
1.0
|
|
C
|
A:GLY372
|
4.8
|
20.6
|
1.0
|
|
CA
|
A:CA503
|
4.8
|
18.7
|
1.0
|
|
CA
|
A:ASP356
|
4.9
|
19.8
|
1.0
|
|
C
|
A:ASN355
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 5 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 5 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:17.8
occ:1.00
|
OD2
|
A:ASP374
|
2.3
|
19.4
|
1.0
|
|
O
|
A:GLY370
|
2.4
|
20.7
|
1.0
|
|
O
|
A:HOH611
|
2.4
|
57.8
|
1.0
|
|
O
|
A:GLY372
|
2.5
|
20.5
|
1.0
|
|
O
|
A:HOH546
|
2.5
|
30.6
|
1.0
|
|
OD1
|
A:ASP400
|
2.6
|
21.6
|
1.0
|
|
CG
|
A:ASP400
|
3.3
|
21.9
|
1.0
|
|
OD2
|
A:ASP400
|
3.4
|
21.8
|
1.0
|
|
CG
|
A:ASP374
|
3.5
|
19.6
|
1.0
|
|
C
|
A:GLY370
|
3.5
|
20.8
|
1.0
|
|
C
|
A:GLY372
|
3.6
|
20.6
|
1.0
|
|
C
|
A:ALA371
|
3.8
|
20.9
|
1.0
|
|
N
|
A:GLY372
|
4.0
|
21.0
|
1.0
|
|
OE1
|
A:GLN399
|
4.0
|
24.1
|
1.0
|
|
O
|
A:ALA371
|
4.0
|
20.8
|
1.0
|
|
CB
|
A:ASP374
|
4.1
|
19.6
|
1.0
|
|
C
|
A:GLY369
|
4.2
|
20.2
|
1.0
|
|
N
|
A:ASP374
|
4.2
|
19.9
|
1.0
|
|
CA
|
A:ALA371
|
4.2
|
21.1
|
1.0
|
|
N
|
A:GLY370
|
4.2
|
20.4
|
1.0
|
|
N
|
A:ALA371
|
4.3
|
20.9
|
1.0
|
|
CA
|
A:GLY372
|
4.4
|
20.8
|
1.0
|
|
CA
|
A:GLY369
|
4.5
|
20.0
|
1.0
|
|
OD1
|
A:ASP374
|
4.5
|
19.5
|
1.0
|
|
CA
|
A:GLY370
|
4.5
|
20.6
|
1.0
|
|
O
|
A:GLY369
|
4.5
|
20.3
|
1.0
|
|
CD
|
A:GLN399
|
4.6
|
23.9
|
1.0
|
|
N
|
A:ALA373
|
4.7
|
20.6
|
1.0
|
|
CA
|
A:CA504
|
4.7
|
20.2
|
1.0
|
|
CB
|
A:ASP400
|
4.8
|
22.0
|
1.0
|
|
CA
|
A:ASP374
|
4.8
|
19.6
|
1.0
|
|
CA
|
A:ALA373
|
4.9
|
20.3
|
1.0
|
|
O
|
A:ASP394
|
4.9
|
21.8
|
1.0
|
|
C
|
A:ALA373
|
4.9
|
20.1
|
1.0
|
|
Calcium binding site 6 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 6 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca506
b:19.6
occ:1.00
|
O
|
A:ASN343
|
2.3
|
19.1
|
1.0
|
|
O
|
A:LEU362
|
2.4
|
19.7
|
1.0
|
|
OD1
|
A:ASN347
|
2.4
|
16.1
|
1.0
|
|
O
|
A:VAL345
|
2.4
|
17.9
|
1.0
|
|
O
|
A:GLY360
|
2.4
|
19.9
|
1.0
|
|
OD1
|
A:ASP365
|
2.6
|
18.7
|
1.0
|
|
CG
|
A:ASP365
|
3.3
|
18.9
|
1.0
|
|
OD2
|
A:ASP365
|
3.4
|
18.3
|
1.0
|
|
CG
|
A:ASN347
|
3.4
|
16.5
|
1.0
|
|
C
|
A:ASN343
|
3.4
|
19.1
|
1.0
|
|
C
|
A:GLY360
|
3.6
|
19.9
|
1.0
|
|
C
|
A:LEU362
|
3.6
|
19.9
|
1.0
|
|
C
|
A:VAL345
|
3.6
|
18.2
|
1.0
|
|
N
|
A:ASN343
|
3.9
|
19.0
|
1.0
|
|
C
|
A:GLY361
|
4.0
|
19.8
|
1.0
|
|
N
|
A:LEU362
|
4.0
|
19.8
|
1.0
|
|
C
|
A:ASP344
|
4.1
|
19.1
|
1.0
|
|
N
|
A:VAL345
|
4.1
|
18.7
|
1.0
|
|
CB
|
A:ASN347
|
4.1
|
16.8
|
1.0
|
|
N
|
A:ASN347
|
4.2
|
17.3
|
1.0
|
|
O
|
A:GLY361
|
4.3
|
19.6
|
1.0
|
|
CA
|
A:ASN343
|
4.3
|
19.0
|
1.0
|
|
CA
|
A:GLY361
|
4.3
|
19.7
|
1.0
|
|
N
|
A:ASP344
|
4.3
|
19.1
|
1.0
|
|
ND2
|
A:ASN347
|
4.3
|
16.4
|
1.0
|
|
OD1
|
A:ASN343
|
4.4
|
19.0
|
1.0
|
|
N
|
A:GLY361
|
4.4
|
19.8
|
1.0
|
|
O
|
A:ASP344
|
4.4
|
19.2
|
1.0
|
|
CA
|
A:LEU362
|
4.4
|
19.9
|
1.0
|
|
CA
|
A:VAL345
|
4.5
|
18.5
|
1.0
|
|
C
|
A:GLY342
|
4.5
|
19.1
|
1.0
|
|
CA
|
A:ASP344
|
4.5
|
19.2
|
1.0
|
|
CA
|
A:GLY360
|
4.5
|
19.9
|
1.0
|
|
N
|
A:ALA346
|
4.5
|
18.0
|
1.0
|
|
N
|
A:GLY363
|
4.6
|
20.0
|
1.0
|
|
CA
|
A:ALA346
|
4.6
|
17.8
|
1.0
|
|
CA
|
A:GLY363
|
4.7
|
19.9
|
1.0
|
|
C
|
A:ALA346
|
4.7
|
17.5
|
1.0
|
|
CA
|
A:GLY342
|
4.7
|
19.1
|
1.0
|
|
CB
|
A:ASP365
|
4.8
|
18.9
|
1.0
|
|
CA
|
A:CA507
|
4.8
|
17.6
|
1.0
|
|
CA
|
A:ASN347
|
4.8
|
17.0
|
1.0
|
|
O
|
A:GLY363
|
5.0
|
19.6
|
1.0
|
|
C
|
A:GLY363
|
5.0
|
19.8
|
1.0
|
|
Calcium binding site 7 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 7 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:17.6
occ:1.00
|
OD2
|
A:ASP365
|
2.2
|
18.3
|
1.0
|
|
O
|
A:GLU383
|
2.3
|
21.6
|
1.0
|
|
O
|
A:HOH545
|
2.3
|
17.1
|
1.0
|
|
O
|
A:GLY361
|
2.4
|
19.6
|
1.0
|
|
O
|
A:GLY363
|
2.4
|
19.6
|
1.0
|
|
OD1
|
A:ASP390
|
2.6
|
21.0
|
1.0
|
|
C
|
A:GLU383
|
3.4
|
21.8
|
1.0
|
|
CG
|
A:ASP365
|
3.4
|
18.9
|
1.0
|
|
CG
|
A:ASP390
|
3.4
|
20.9
|
1.0
|
|
OD2
|
A:ASP390
|
3.5
|
20.9
|
1.0
|
|
C
|
A:GLY363
|
3.5
|
19.8
|
1.0
|
|
C
|
A:GLY361
|
3.5
|
19.8
|
1.0
|
|
C
|
A:LEU362
|
3.9
|
19.9
|
1.0
|
|
N
|
A:GLY363
|
4.0
|
20.0
|
1.0
|
|
O
|
A:LEU362
|
4.0
|
19.7
|
1.0
|
|
CA
|
A:GLU383
|
4.1
|
21.7
|
1.0
|
|
C
|
A:GLY360
|
4.1
|
19.9
|
1.0
|
|
N
|
A:GLY361
|
4.2
|
19.8
|
1.0
|
|
N
|
A:ASP365
|
4.2
|
19.3
|
1.0
|
|
CB
|
A:ASP365
|
4.2
|
18.9
|
1.0
|
|
CB
|
A:GLU383
|
4.2
|
21.5
|
1.0
|
|
OD1
|
A:ASP365
|
4.3
|
18.7
|
1.0
|
|
CA
|
A:GLY363
|
4.3
|
19.9
|
1.0
|
|
CA
|
A:LEU362
|
4.3
|
19.9
|
1.0
|
|
N
|
A:LEU362
|
4.3
|
19.8
|
1.0
|
|
CA
|
A:GLY360
|
4.5
|
19.9
|
1.0
|
|
O
|
A:GLY360
|
4.5
|
19.9
|
1.0
|
|
N
|
A:SER384
|
4.5
|
22.0
|
1.0
|
|
N
|
A:ALA364
|
4.5
|
19.8
|
1.0
|
|
CA
|
A:GLY361
|
4.5
|
19.7
|
1.0
|
|
CA
|
A:ALA364
|
4.6
|
19.8
|
1.0
|
|
CA
|
A:SER384
|
4.7
|
22.2
|
1.0
|
|
O
|
A:HOH519
|
4.8
|
17.9
|
1.0
|
|
CA
|
A:CA506
|
4.8
|
19.6
|
1.0
|
|
C
|
A:ALA364
|
4.8
|
19.6
|
1.0
|
|
CB
|
A:ASP390
|
4.9
|
21.1
|
1.0
|
|
CA
|
A:ASP365
|
4.9
|
19.2
|
1.0
|
|
CB
|
A:SER384
|
4.9
|
22.1
|
1.0
|
|
Calcium binding site 8 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 8 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca508
b:49.5
occ:1.00
|
OD1
|
A:ASP450
|
2.4
|
29.3
|
1.0
|
|
OG
|
A:SER448
|
2.5
|
30.1
|
1.0
|
|
O
|
A:HIS452
|
2.5
|
26.6
|
1.0
|
|
OD1
|
A:ASP446
|
2.5
|
28.7
|
1.0
|
|
OD2
|
A:ASP454
|
2.5
|
26.8
|
1.0
|
|
CG
|
A:ASP450
|
3.4
|
30.1
|
1.0
|
|
CG
|
A:ASP454
|
3.4
|
26.5
|
1.0
|
|
C
|
A:HIS452
|
3.6
|
26.4
|
1.0
|
|
CG
|
A:ASP446
|
3.6
|
27.7
|
1.0
|
|
CB
|
A:SER448
|
3.7
|
30.9
|
1.0
|
|
CB
|
A:ASP454
|
3.8
|
26.8
|
1.0
|
|
OD2
|
A:ASP450
|
3.9
|
31.0
|
1.0
|
|
N
|
A:SER448
|
4.1
|
29.3
|
1.0
|
|
N
|
A:ASP450
|
4.2
|
29.2
|
1.0
|
|
N
|
A:ASP454
|
4.2
|
25.6
|
1.0
|
|
N
|
A:GLY449
|
4.2
|
29.2
|
1.0
|
|
N
|
A:HIS452
|
4.3
|
27.1
|
1.0
|
|
CA
|
A:HIS452
|
4.3
|
27.0
|
1.0
|
|
CA
|
A:ASP446
|
4.4
|
26.7
|
1.0
|
|
CA
|
A:SER448
|
4.4
|
30.4
|
1.0
|
|
CB
|
A:ASP446
|
4.4
|
26.8
|
1.0
|
|
C
|
A:ALA453
|
4.4
|
25.9
|
1.0
|
|
OD2
|
A:ASP446
|
4.4
|
28.0
|
1.0
|
|
CB
|
A:HIS452
|
4.4
|
28.0
|
1.0
|
|
OD1
|
A:ASP454
|
4.5
|
26.2
|
1.0
|
|
CB
|
A:ASP450
|
4.5
|
30.5
|
1.0
|
|
N
|
A:PHE447
|
4.5
|
27.5
|
1.0
|
|
N
|
A:ALA453
|
4.6
|
26.0
|
1.0
|
|
CA
|
A:ASP454
|
4.6
|
26.1
|
1.0
|
|
C
|
A:ASP446
|
4.7
|
27.1
|
1.0
|
|
CA
|
A:ASP450
|
4.8
|
29.6
|
1.0
|
|
C
|
A:SER448
|
4.8
|
30.2
|
1.0
|
|
CA
|
A:ALA453
|
4.8
|
25.4
|
1.0
|
|
O
|
A:ALA453
|
4.8
|
26.5
|
1.0
|
|
Calcium binding site 9 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 9 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:18.0
occ:1.00
|
O
|
B:ARG253
|
2.3
|
17.7
|
1.0
|
|
O
|
B:GLY287
|
2.3
|
18.2
|
1.0
|
|
O
|
B:GLY255
|
2.3
|
18.2
|
1.0
|
|
OD1
|
B:ASP290
|
2.4
|
17.0
|
1.0
|
|
OG1
|
B:THR257
|
2.5
|
17.7
|
1.0
|
|
OD2
|
B:ASP285
|
2.6
|
17.2
|
1.0
|
|
OD1
|
B:ASP285
|
2.6
|
17.3
|
1.0
|
|
CG
|
B:ASP285
|
2.9
|
17.0
|
1.0
|
|
CG
|
B:ASP290
|
3.3
|
17.1
|
1.0
|
|
C
|
B:ARG253
|
3.4
|
18.0
|
1.0
|
|
OD2
|
B:ASP290
|
3.5
|
17.1
|
1.0
|
|
C
|
B:GLY255
|
3.5
|
18.5
|
1.0
|
|
C
|
B:GLY287
|
3.5
|
18.4
|
1.0
|
|
CB
|
B:THR257
|
3.6
|
17.6
|
1.0
|
|
N
|
B:THR257
|
3.8
|
17.9
|
1.0
|
|
C
|
B:THR254
|
3.9
|
18.6
|
1.0
|
|
N
|
B:GLY255
|
3.9
|
18.6
|
1.0
|
|
CB
|
B:ARG253
|
4.1
|
17.5
|
1.0
|
|
N
|
B:THR254
|
4.2
|
18.3
|
1.0
|
|
CA
|
B:THR254
|
4.3
|
18.5
|
1.0
|
|
O
|
B:THR254
|
4.3
|
18.6
|
1.0
|
|
N
|
B:GLY287
|
4.3
|
18.1
|
1.0
|
|
CA
|
B:THR257
|
4.3
|
17.7
|
1.0
|
|
CA
|
B:ARG253
|
4.3
|
17.8
|
1.0
|
|
CA
|
B:GLY255
|
4.3
|
18.7
|
1.0
|
|
N
|
B:GLY288
|
4.4
|
18.5
|
1.0
|
|
CA
|
B:GLY288
|
4.4
|
18.4
|
1.0
|
|
CB
|
B:ASP285
|
4.4
|
16.8
|
1.0
|
|
O
|
B:HOH478
|
4.5
|
26.4
|
1.0
|
|
N
|
B:ASP256
|
4.5
|
18.6
|
1.0
|
|
CA
|
B:GLY287
|
4.5
|
18.3
|
1.0
|
|
O
|
B:HOH495
|
4.5
|
14.3
|
1.0
|
|
C
|
B:ASP256
|
4.6
|
18.2
|
1.0
|
|
CA
|
B:ASP256
|
4.6
|
18.5
|
1.0
|
|
CB
|
B:ASP290
|
4.6
|
17.0
|
1.0
|
|
CG2
|
B:THR257
|
4.7
|
17.5
|
1.0
|
|
C
|
B:GLY288
|
4.7
|
18.2
|
1.0
|
|
O
|
B:GLY288
|
4.9
|
18.0
|
1.0
|
|
N
|
B:ALA286
|
5.0
|
17.4
|
1.0
|
|
Calcium binding site 10 out
of 16 in 3vi1
Go back to
Calcium Binding Sites List in 3vi1
Calcium binding site 10 out
of 16 in the Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:16.9
occ:1.00
|
O
|
B:HOH495
|
2.3
|
14.3
|
1.0
|
|
OD2
|
B:ASP290
|
2.3
|
17.1
|
1.0
|
|
O
|
B:THR327
|
2.3
|
18.3
|
1.0
|
|
O
|
B:GLY288
|
2.4
|
18.0
|
1.0
|
|
O
|
B:HOH520
|
2.4
|
17.3
|
1.0
|
|
OE1
|
B:GLU329
|
2.6
|
16.7
|
1.0
|
|
OE2
|
B:GLU329
|
2.8
|
17.4
|
1.0
|
|
CD
|
B:GLU329
|
3.1
|
17.2
|
1.0
|
|
CG
|
B:ASP290
|
3.4
|
17.1
|
1.0
|
|
C
|
B:GLY288
|
3.5
|
18.2
|
1.0
|
|
C
|
B:THR327
|
3.6
|
18.2
|
1.0
|
|
C
|
B:GLY287
|
4.1
|
18.4
|
1.0
|
|
N
|
B:GLY288
|
4.1
|
18.5
|
1.0
|
|
CB
|
B:ASP290
|
4.2
|
17.0
|
1.0
|
|
N
|
B:ASP290
|
4.2
|
17.4
|
1.0
|
|
O
|
B:GLY287
|
4.2
|
18.2
|
1.0
|
|
OD1
|
B:ASP285
|
4.2
|
17.3
|
1.0
|
|
O
|
B:HOH483
|
4.3
|
18.8
|
1.0
|
|
OD1
|
B:ASP290
|
4.3
|
17.0
|
1.0
|
|
CA
|
B:GLY288
|
4.4
|
18.4
|
1.0
|
|
CB
|
B:THR327
|
4.4
|
18.9
|
1.0
|
|
N
|
B:VAL328
|
4.5
|
17.7
|
1.0
|
|
N
|
B:ASN289
|
4.5
|
18.2
|
1.0
|
|
CA
|
B:THR327
|
4.5
|
18.6
|
1.0
|
|
CA
|
B:VAL328
|
4.5
|
17.3
|
1.0
|
|
CA
|
B:ASN289
|
4.6
|
18.0
|
1.0
|
|
CG
|
B:GLU329
|
4.6
|
17.0
|
1.0
|
|
CA
|
B:GLY287
|
4.7
|
18.3
|
1.0
|
|
C
|
B:ASN289
|
4.8
|
17.7
|
1.0
|
|
CA
|
B:ASP290
|
4.8
|
17.1
|
1.0
|
|
N
|
B:GLU329
|
4.8
|
16.9
|
1.0
|
|
N
|
B:THR327
|
4.9
|
19.1
|
1.0
|
|
CG2
|
B:THR327
|
5.0
|
18.6
|
1.0
|
|
Reference:
K.Matoba,
S.Harada.
Crystal Structure of Pseudomonas Aerginosa Alkaline Protease Complexed with Substance P(1-6) To Be Published.
Page generated: Sat Dec 12 04:34:12 2020
|
