Calcium in PDB 3vo8: Staphylococcus Aureus Ftsz Gdp-Form

The structure of Staphylococcus Aureus Ftsz Gdp-Form, PDB code: 3vo8 was solved by T.Matsui, N.Mogi, M.Yao, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.11 / 2.25
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.039, 44.079, 85.993, 96.89, 103.57, 108.00
R / Rfree (%)	18.8 / 23.7

The binding sites of Calcium atom in the Staphylococcus Aureus Ftsz Gdp-Form (pdb code 3vo8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Staphylococcus Aureus Ftsz Gdp-Form, PDB code: 3vo8:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Staphylococcus Aureus Ftsz Gdp-Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Staphylococcus Aureus Ftsz Gdp-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:31.7 occ:0.87 O A:VAL203 2.3 31.8 1.0 O A:LEU200 2.3 32.1 1.0 OD1 A:ASN208 2.4 22.5 1.0 O A:LEU209 2.4 23.5 1.0 O A:HOH642 2.5 27.2 1.0 O A:HOH641 2.5 30.9 1.0 CG A:ASN208 3.3 25.2 1.0 C A:LEU200 3.4 26.7 1.0 C A:VAL203 3.5 31.2 1.0 C A:LEU209 3.6 23.3 1.0 ND2 A:ASN208 3.6 26.6 1.0 N A:LEU209 4.1 25.3 1.0 CA A:SER204 4.1 30.1 1.0 N A:GLY205 4.2 23.8 1.0 CA A:LEU200 4.2 25.5 1.0 N A:SER204 4.3 30.2 1.0 N A:ILE201 4.4 24.8 1.0 CA A:LEU209 4.4 24.8 1.0 CA A:ASP210 4.5 24.8 1.0 N A:ASP210 4.5 21.9 1.0 N A:VAL203 4.5 27.8 1.0 CA A:VAL203 4.6 31.2 1.0 CG2 A:VAL203 4.6 34.0 1.0 O A:HOH603 4.6 18.8 1.0 O A:ILE201 4.6 29.5 1.0 CA A:ILE201 4.6 26.4 1.0 C A:ILE201 4.6 27.8 1.0 CB A:ASN208 4.7 20.7 1.0 C A:SER204 4.7 30.7 1.0 CB A:ASP210 4.8 28.4 1.0 CB A:LEU200 4.8 24.7 1.0 C A:ASN208 4.9 23.2 1.0 CA A:ASN208 4.9 24.4 1.0 CD2 A:LEU200 5.0 31.0 1.0

Calcium binding site 2 out of 2 in the Staphylococcus Aureus Ftsz Gdp-Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Staphylococcus Aureus Ftsz Gdp-Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:36.9 occ:0.75 O B:VAL203 2.3 36.8 1.0 O B:LEU200 2.4 35.6 1.0 O B:LEU209 2.4 27.6 1.0 OD1 B:ASN208 2.4 26.2 1.0 O B:HOH639 2.5 25.9 1.0 O B:HOH638 2.6 34.4 1.0 CG B:ASN208 3.4 31.0 1.0 C B:VAL203 3.4 37.8 1.0 C B:LEU200 3.5 35.7 1.0 C B:LEU209 3.6 29.9 1.0 ND2 B:ASN208 3.7 31.4 1.0 N B:GLY205 4.1 31.1 1.0 CA B:SER204 4.1 37.6 1.0 N B:LEU209 4.1 33.9 1.0 N B:SER204 4.2 34.7 1.0 CA B:LEU200 4.3 32.0 1.0 N B:ASP210 4.5 28.4 1.0 CA B:VAL203 4.5 36.8 1.0 CA B:LEU209 4.5 34.7 1.0 CA B:ASP210 4.5 30.5 1.0 O B:ILE201 4.5 31.8 1.0 N B:ILE201 4.5 31.6 1.0 N B:VAL203 4.6 39.3 1.0 C B:SER204 4.6 35.4 1.0 O B:HOH640 4.6 24.0 1.0 CB B:ASN208 4.7 29.4 1.0 C B:ILE201 4.7 31.3 1.0 CA B:ILE201 4.8 34.1 1.0 CB B:ASP210 4.9 28.9 1.0 CA B:ASN208 4.9 31.9 1.0 C B:ASN208 4.9 29.7 1.0 CB B:VAL203 4.9 39.3 1.0 CB B:LEU200 5.0 31.9 1.0

T.Matsui, J.Yamane, N.Mogi, H.Yamaguchi, H.Takemoto, M.Yao, I.Tanaka. Structural Reorganization of the Bacterial Cell-Division Protein Ftsz From Staphylococcus Aureus Acta Crystallogr.,Sect.D V. 68 1175 2012.
ISSN: ISSN 0907-4449
PubMed: 22948918
DOI: 10.1107/S0907444912022640