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Calcium in PDB 3w6p: Crystal Structure of Human DLP1 in Complex with Gdp.ALF4

Enzymatic activity of Crystal Structure of Human DLP1 in Complex with Gdp.ALF4

All present enzymatic activity of Crystal Structure of Human DLP1 in Complex with Gdp.ALF4:
3.6.5.5;

Protein crystallography data

The structure of Crystal Structure of Human DLP1 in Complex with Gdp.ALF4, PDB code: 3w6p was solved by H.Kishida, S.Sugio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.410, 109.130, 128.730, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.4

Other elements in 3w6p:

The structure of Crystal Structure of Human DLP1 in Complex with Gdp.ALF4 also contains other interesting chemical elements:

Fluorine (F) 8 atoms
Magnesium (Mg) 2 atoms
Aluminium (Al) 2 atoms
Sodium (Na) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human DLP1 in Complex with Gdp.ALF4 (pdb code 3w6p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Human DLP1 in Complex with Gdp.ALF4, PDB code: 3w6p:

Calcium binding site 1 out of 1 in 3w6p

Go back to Calcium Binding Sites List in 3w6p
Calcium binding site 1 out of 1 in the Crystal Structure of Human DLP1 in Complex with Gdp.ALF4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human DLP1 in Complex with Gdp.ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca805

b:17.3
occ:1.00
O B:HOH1167 2.3 23.5 1.0
O B:HOH1015 2.4 21.2 1.0
O B:HOH1126 2.4 23.4 1.0
O B:HOH1223 2.4 17.5 1.0
O B:HOH1131 2.5 25.9 1.0
O B:HOH1127 2.5 22.8 1.0
O B:HOH1224 2.5 23.7 1.0
O B:HOH1051 2.9 27.8 1.0
OE2 B:GLU729 4.5 18.9 1.0
O B:HOH1117 4.6 28.2 1.0
OE1 B:GLU729 4.7 16.9 1.0

Reference:

H.Kishida, S.Sugio. Crystal Structure of Gtpase Domain Fused with Minimal Stalks From Human Dynamin-1-Like Protein (DLP1) in Complex with Several Nucleotide Analogues Curr Top Pept Protein Res. V. 14 67 2013.
ISSN: ISSN 0972-4524
Page generated: Sat Dec 12 04:35:00 2020

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