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Calcium in PDB 3wax: Crystal Structure of Autotaxin in Complex with 3BOA

Enzymatic activity of Crystal Structure of Autotaxin in Complex with 3BOA

All present enzymatic activity of Crystal Structure of Autotaxin in Complex with 3BOA:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Autotaxin in Complex with 3BOA, PDB code: 3wax was solved by H.Nishimasu, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.24 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.607, 94.479, 75.305, 90.00, 93.90, 90.00
R / Rfree (%) 17.8 / 22.4

Other elements in 3wax:

The structure of Crystal Structure of Autotaxin in Complex with 3BOA also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 2 atoms
Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Autotaxin in Complex with 3BOA (pdb code 3wax). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Autotaxin in Complex with 3BOA, PDB code: 3wax:

Calcium binding site 1 out of 1 in 3wax

Go back to Calcium Binding Sites List in 3wax
Calcium binding site 1 out of 1 in the Crystal Structure of Autotaxin in Complex with 3BOA


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Autotaxin in Complex with 3BOA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca914

b:33.3
occ:1.00
OD1 A:ASP743 2.3 26.4 1.0
OD1 A:ASN737 2.3 28.3 1.0
O A:LEU741 2.4 24.4 1.0
OD1 A:ASP735 2.4 25.3 1.0
O A:HOH1043 2.4 28.4 1.0
OD1 A:ASN739 2.4 25.1 1.0
CG A:ASN739 3.3 29.4 1.0
CG A:ASN737 3.4 25.6 1.0
CG A:ASP743 3.5 29.7 1.0
C A:LEU741 3.5 24.2 1.0
CG A:ASP735 3.5 23.0 1.0
ND2 A:ASN739 3.8 28.1 1.0
ND2 A:ASN737 3.8 27.3 1.0
N A:ASP743 3.9 25.0 1.0
CA A:ASP735 3.9 25.4 1.0
CA A:ASP743 4.0 29.9 1.0
C A:ARG742 4.1 25.3 1.0
N A:LEU741 4.1 24.0 1.0
CB A:ASP735 4.2 21.2 1.0
O A:ARG742 4.2 27.1 1.0
CA A:LEU741 4.2 24.0 1.0
O A:PHE734 4.3 24.1 1.0
OD2 A:ASP743 4.3 31.1 1.0
CB A:ASP743 4.3 31.8 1.0
N A:ASN739 4.4 22.3 1.0
C A:ASP735 4.4 29.7 1.0
OD2 A:ASP735 4.5 26.1 1.0
OE1 A:GLU747 4.5 36.5 1.0
CB A:LEU741 4.5 23.7 1.0
N A:ASN737 4.5 26.5 1.0
N A:ARG742 4.5 23.3 1.0
CB A:ASN739 4.6 24.5 1.0
N A:TYR736 4.6 26.8 1.0
CB A:ASN737 4.7 26.0 1.0
CA A:ARG742 4.8 26.2 1.0
N A:TYR738 4.8 27.1 1.0
N A:GLY740 4.9 25.7 1.0
CA A:ASN739 4.9 22.9 1.0
CA A:ASN737 4.9 26.3 1.0
C A:ASN737 4.9 23.8 1.0
N A:ASP735 5.0 25.6 1.0

Reference:

M.Kawaguchi, T.Okabe, S.Okudaira, H.Nishimasu, R.Ishitani, H.Kojima, O.Nureki, J.Aoki, T.Nagano. Screening and X-Ray Crystal Structure-Based Optimization of Autotaxin (ENPP2) Inhibitors, Using A Newly Developed Fluorescence Probe Acs Chem.Biol. V. 8 1713 2013.
ISSN: ISSN 1554-8929
PubMed: 23688339
DOI: 10.1021/CB400150C
Page generated: Sat Dec 12 04:35:12 2020

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