Atomistry » Calcium » PDB 3vyk-3whd » 3wfc
Atomistry »
  Calcium »
    PDB 3vyk-3whd »
      3wfc »

Calcium in PDB 3wfc: Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment

Enzymatic activity of Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment

All present enzymatic activity of Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment:
1.7.2.5;

Protein crystallography data

The structure of Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment, PDB code: 3wfc was solved by N.Sato, S.Ishii, T.Hino, H.Sugimoto, Y.Fukumori, Y.Shiro, T.Tosha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.37 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.672, 107.072, 196.922, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.2

Other elements in 3wfc:

The structure of Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment (pdb code 3wfc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment, PDB code: 3wfc:

Calcium binding site 1 out of 1 in 3wfc

Go back to Calcium Binding Sites List in 3wfc
Calcium binding site 1 out of 1 in the Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Reduced and Carbonmonoxide-Bound Cytochrome C-Dependent Nitric Oxide Reductase (Cnor) From Pseudomonas Aeruginosa in Complex with Antibody Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca808

b:46.2
occ:1.00
 O2D B:HEM801 2.2 45.1 1.0
OE1 B:GLU135 2.3 38.1 1.0
O2A B:HEM802 2.3 41.8 1.0
O C:GLY71 2.5 37.1 1.0
O B:HOH905 2.5 47.1 1.0
OE2 B:GLU135 2.6 41.7 1.0
OH C:TYR73 2.8 37.3 1.0
CD B:GLU135 2.8 41.0 1.0
CGA B:HEM802 3.2 42.8 1.0
CGD B:HEM801 3.3 44.2 1.0
C C:GLY71 3.5 37.0 1.0
CZ C:TYR73 3.6 37.3 1.0
O1D B:HEM801 3.6 46.3 1.0
O1A B:HEM802 3.6 43.3 1.0
NH2 B:ARG57 3.7 38.2 1.0
N C:GLY71 3.9 37.5 1.0
CA C:GLY71 4.0 37.3 1.0
CE1 C:TYR73 4.3 36.8 1.0
CG B:GLU135 4.3 41.4 1.0
CE2 C:TYR73 4.3 37.2 1.0
CBA B:HEM802 4.3 42.2 1.0
CZ B:PHE136 4.5 44.8 1.0
CZ B:ARG57 4.5 39.3 1.0
CAA B:HEM802 4.6 40.8 1.0
NH1 B:ARG57 4.6 37.8 1.0
N C:ALA72 4.7 36.7 1.0
CBD B:HEM801 4.7 41.6 1.0
O C:HOH308 4.7 43.4 1.0
CE2 B:PHE136 5.0 46.2 1.0

Reference:

N.Sato, S.Ishii, H.Sugimoto, T.Hino, Y.Fukumori, Y.Sako, Y.Shiro, T.Tosha. Structures of Reduced and Ligand-Bound Nitric Oxide Reductase Provide Insights Into Functional Differences in Respiratory Enzymes Proteins 2013.
ISSN: ESSN 1097-0134
PubMed: 24338896
DOI: 10.1002/PROT.24492
Page generated: Sat Jul 13 21:01:34 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy