Calcium in PDB 3wgj: Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS
Protein crystallography data
The structure of Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS, PDB code: 3wgj
was solved by
T.Matsui,
I.Tanaka,
M.Yao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.49 /
2.18
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.955,
43.862,
86.488,
96.91,
102.34,
109.38
|
R / Rfree (%)
|
18.5 /
23.5
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS
(pdb code 3wgj). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS, PDB code: 3wgj:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 3wgj
Go back to
Calcium Binding Sites List in 3wgj
Calcium binding site 1 out
of 2 in the Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:37.1
occ:0.75
|
O
|
A:HOH523
|
2.3
|
28.2
|
1.0
|
O
|
A:THR203
|
2.3
|
33.7
|
1.0
|
O
|
A:LEU200
|
2.3
|
26.3
|
1.0
|
O
|
A:LEU209
|
2.5
|
21.3
|
1.0
|
OD1
|
A:ASN208
|
2.6
|
24.9
|
1.0
|
O
|
A:HOH550
|
2.7
|
25.3
|
1.0
|
C
|
A:THR203
|
3.2
|
31.4
|
1.0
|
C
|
A:LEU200
|
3.5
|
29.9
|
1.0
|
CG
|
A:ASN208
|
3.6
|
24.4
|
1.0
|
C
|
A:LEU209
|
3.7
|
24.3
|
1.0
|
N
|
A:PRO204
|
4.0
|
31.3
|
1.0
|
N
|
A:THR203
|
4.0
|
27.3
|
1.0
|
ND2
|
A:ASN208
|
4.0
|
26.6
|
1.0
|
N
|
A:LEU209
|
4.1
|
24.7
|
1.0
|
CA
|
A:PRO204
|
4.1
|
32.4
|
1.0
|
CA
|
A:THR203
|
4.1
|
34.3
|
1.0
|
CA
|
A:LEU200
|
4.2
|
29.9
|
1.0
|
N
|
A:GLY205
|
4.3
|
28.3
|
1.0
|
C
|
A:PRO204
|
4.4
|
26.5
|
1.0
|
O
|
A:ILE201
|
4.5
|
32.2
|
1.0
|
CA
|
A:LEU209
|
4.5
|
25.2
|
1.0
|
N
|
A:ILE201
|
4.5
|
29.7
|
1.0
|
C
|
A:ILE201
|
4.6
|
28.6
|
1.0
|
N
|
A:ASP210
|
4.7
|
25.6
|
1.0
|
CA
|
A:ASP210
|
4.7
|
27.5
|
1.0
|
O
|
A:HOH531
|
4.7
|
22.6
|
1.0
|
CB
|
A:THR203
|
4.8
|
31.8
|
1.0
|
CA
|
A:ILE201
|
4.8
|
29.9
|
1.0
|
CB
|
A:ASN208
|
4.9
|
24.2
|
1.0
|
CB
|
A:LEU200
|
4.9
|
30.0
|
1.0
|
C
|
A:ALA202
|
4.9
|
34.9
|
1.0
|
CB
|
A:ASP210
|
5.0
|
24.6
|
1.0
|
O
|
A:ASP199
|
5.0
|
31.7
|
1.0
|
|
Calcium binding site 2 out
of 2 in 3wgj
Go back to
Calcium Binding Sites List in 3wgj
Calcium binding site 2 out
of 2 in the Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Staphylococcus Aureus Ftsz T7 Chimera Mutant, T7BS within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:36.2
occ:0.68
|
O
|
B:HOH537
|
2.3
|
30.9
|
1.0
|
O
|
B:LEU200
|
2.3
|
29.6
|
1.0
|
O
|
B:THR203
|
2.3
|
35.3
|
1.0
|
O
|
B:LEU209
|
2.4
|
19.6
|
1.0
|
O
|
B:HOH533
|
2.5
|
25.7
|
1.0
|
OD1
|
B:ASN208
|
2.6
|
29.7
|
1.0
|
C
|
B:THR203
|
3.4
|
31.6
|
1.0
|
C
|
B:LEU200
|
3.4
|
27.7
|
1.0
|
CG
|
B:ASN208
|
3.5
|
26.9
|
1.0
|
C
|
B:LEU209
|
3.6
|
22.2
|
1.0
|
ND2
|
B:ASN208
|
3.9
|
27.2
|
1.0
|
N
|
B:LEU209
|
3.9
|
25.5
|
1.0
|
CA
|
B:PRO204
|
4.1
|
33.4
|
1.0
|
N
|
B:PRO204
|
4.2
|
34.8
|
1.0
|
CA
|
B:LEU200
|
4.2
|
28.2
|
1.0
|
N
|
B:THR203
|
4.3
|
29.9
|
1.0
|
CA
|
B:THR203
|
4.3
|
34.1
|
1.0
|
CA
|
B:LEU209
|
4.4
|
24.6
|
1.0
|
N
|
B:GLY205
|
4.4
|
27.1
|
1.0
|
N
|
B:ILE201
|
4.4
|
28.3
|
1.0
|
N
|
B:ASP210
|
4.5
|
24.1
|
1.0
|
CA
|
B:ASP210
|
4.6
|
23.7
|
1.0
|
O
|
B:HOH524
|
4.6
|
19.8
|
1.0
|
C
|
B:PRO204
|
4.6
|
29.8
|
1.0
|
O
|
B:ILE201
|
4.6
|
33.1
|
1.0
|
C
|
B:ILE201
|
4.6
|
30.8
|
1.0
|
CA
|
B:ILE201
|
4.7
|
28.3
|
1.0
|
CB
|
B:LEU209
|
4.8
|
21.4
|
1.0
|
CB
|
B:ASN208
|
4.8
|
25.6
|
1.0
|
CB
|
B:LEU200
|
4.8
|
28.2
|
1.0
|
CB
|
B:THR203
|
4.9
|
34.2
|
1.0
|
CB
|
B:ASP210
|
4.9
|
26.2
|
1.0
|
C
|
B:ASN208
|
4.9
|
24.8
|
1.0
|
CA
|
B:ASN208
|
5.0
|
27.2
|
1.0
|
|
Reference:
T.Matsui,
X.Han,
J.Yu,
M.Yao,
I.Tanaka.
Structural Change in Ftsz Induced By Intermolecular Interactions Between Bound Gtp and the T7 Loop J.Biol.Chem. V. 289 3501 2014.
ISSN: ISSN 0021-9258
PubMed: 24347164
DOI: 10.1074/JBC.M113.514901
Page generated: Sat Dec 12 04:35:28 2020
|