Calcium in PDB 3wmt: Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae

All present enzymatic activity of Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae:
3.1.1.73;

The structure of Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae, PDB code: 3wmt was solved by K.Suzuki, T.Ishida, K.Igarashi, T.Koseki, S.Fushinobu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.73 / 1.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	93.954, 142.937, 73.810, 90.00, 90.00, 90.00
R / Rfree (%)	14.1 / 16.8

The binding sites of Calcium atom in the Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae (pdb code 3wmt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae, PDB code: 3wmt:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca606 b:10.4 occ:1.00 O A:ILE281 2.3 9.3 1.0 O A:ALA277 2.4 11.2 1.0 OD1 A:ASP279 2.4 11.3 1.0 OD1 A:ASP272 2.5 10.5 1.0 O A:HOH705 2.5 10.4 1.0 O A:ASP272 2.5 9.4 1.0 OD2 A:ASP275 2.5 8.9 1.0 OD1 A:ASP275 2.6 8.8 1.0 CG A:ASP275 3.0 9.0 1.0 C A:ILE281 3.5 9.6 1.0 C A:ASP272 3.5 9.5 1.0 CG A:ASP279 3.5 12.3 1.0 C A:ALA277 3.5 11.9 1.0 CG A:ASP272 3.6 12.2 1.0 OD2 A:ASP279 4.0 12.4 1.0 CA A:ASP272 4.0 9.2 1.0 N A:ILE281 4.0 11.8 1.0 CB A:ALA277 4.2 11.2 1.0 N A:ASP279 4.2 11.8 1.0 CA A:ILE281 4.2 11.1 1.0 CA A:ALA277 4.2 11.7 1.0 N A:ALA277 4.4 11.2 1.0 CB A:ASP272 4.4 10.0 1.0 CB A:ASP275 4.4 9.9 1.0 O A:HOH721 4.4 11.3 1.0 CB A:ILE281 4.4 11.3 1.0 N A:SER273 4.5 12.0 1.0 N A:ILE282 4.5 9.8 1.0 N A:LYS278 4.6 12.8 1.0 OD2 A:ASP272 4.6 12.6 1.0 N A:GLU283 4.7 9.0 1.0 CB A:ASP279 4.7 10.9 1.0 CA A:ILE282 4.7 9.4 1.0 CA A:SER273 4.8 11.3 1.0 CA A:LYS278 4.8 12.2 1.0 CA A:ASP279 4.8 11.4 1.0 N A:GLY280 4.9 10.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Feruloyl Esterase B From Aspergillus Oryzae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca604 b:10.8 occ:1.00 O B:ILE281 2.3 10.2 1.0 O B:ALA277 2.4 12.6 1.0 OD1 B:ASP279 2.4 12.1 1.0 OD1 B:ASP272 2.4 11.0 1.0 OD2 B:ASP275 2.5 10.3 1.0 O B:ASP272 2.5 10.2 1.0 O B:HOH710 2.5 11.6 1.0 OD1 B:ASP275 2.6 10.7 1.0 CG B:ASP275 2.9 10.0 1.0 C B:ASP272 3.4 9.2 1.0 CG B:ASP279 3.5 13.8 1.0 C B:ILE281 3.5 10.8 1.0 C B:ALA277 3.6 13.7 1.0 CG B:ASP272 3.6 11.3 1.0 CA B:ASP272 4.0 10.6 1.0 OD2 B:ASP279 4.0 13.9 1.0 N B:ILE281 4.1 11.2 1.0 N B:ASP279 4.2 12.1 1.0 CB B:ALA277 4.2 12.6 1.0 CA B:ALA277 4.3 11.7 1.0 CA B:ILE281 4.3 11.9 1.0 CB B:ASP275 4.4 10.4 1.0 O B:HOH709 4.4 10.5 1.0 CB B:ASP272 4.4 10.9 1.0 N B:ALA277 4.4 12.2 1.0 N B:SER273 4.5 10.8 1.0 CB B:ILE281 4.5 13.3 1.0 N B:ILE282 4.6 10.1 1.0 N B:LYS278 4.6 14.1 1.0 CB B:ASP279 4.6 13.9 1.0 N B:GLU283 4.6 9.0 1.0 OD2 B:ASP272 4.6 13.1 1.0 CA B:SER273 4.8 10.7 1.0 CA B:ILE282 4.8 9.1 1.0 CA B:LYS278 4.8 13.8 1.0 CA B:ASP279 4.8 13.8 1.0 N B:GLY280 4.9 11.2 1.0

K.Suzuki, A.Hori, K.Kawamoto, R.R.Thangudu, T.Ishida, K.Igarashi, M.Samejima, T.Wakagi, T.Koseki, S.Fushinobu. Crystal Structure of A Feruloyl Esterase Belonging to the Tannase Family: A Disulfide Bond Near A Catalytic Triad Proteins 2014.
ISSN: ESSN 1097-0134
DOI: 10.1002/PROT.24649