Calcium in PDB 3zdy: Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
Protein crystallography data
The structure of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex, PDB code: 3zdy
was solved by
J.H.Zhu,
J.Q.Zhu,
T.A.Springer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.15 /
2.45
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
257.760,
145.250,
106.060,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.2 /
21.6
|
Other elements in 3zdy:
The structure of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
(pdb code 3zdy). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex, PDB code: 3zdy:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 1 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2004
b:43.3
occ:1.00
|
OD1
|
A:ASP245
|
2.3
|
43.8
|
1.0
|
|
O
|
A:ASP247
|
2.3
|
58.5
|
1.0
|
|
O
|
A:THR250
|
2.4
|
47.3
|
1.0
|
|
OE2
|
A:GLU243
|
2.4
|
39.3
|
1.0
|
|
OG1
|
A:THR250
|
2.4
|
49.0
|
1.0
|
|
OE1
|
A:GLU243
|
2.4
|
43.7
|
1.0
|
|
OE2
|
A:GLU252
|
2.4
|
42.0
|
1.0
|
|
OE1
|
A:GLU252
|
2.5
|
37.5
|
1.0
|
|
CD
|
A:GLU243
|
2.7
|
33.3
|
1.0
|
|
CD
|
A:GLU252
|
2.8
|
41.0
|
1.0
|
|
C
|
A:THR250
|
3.1
|
52.0
|
1.0
|
|
CG
|
A:ASP245
|
3.2
|
47.8
|
1.0
|
|
H
|
A:THR250
|
3.4
|
83.5
|
1.0
|
|
CB
|
A:THR250
|
3.4
|
50.9
|
1.0
|
|
C
|
A:ASP247
|
3.5
|
53.3
|
1.0
|
|
OD2
|
A:ASP245
|
3.5
|
55.0
|
1.0
|
|
H
|
A:ASP247
|
3.6
|
65.7
|
1.0
|
|
CA
|
A:THR250
|
3.7
|
56.3
|
1.0
|
|
HB3
|
A:ASP247
|
3.7
|
78.2
|
1.0
|
|
HB
|
A:THR250
|
3.7
|
61.0
|
1.0
|
|
H
|
A:ASP245
|
3.7
|
49.0
|
1.0
|
|
HA
|
A:GLU243
|
3.8
|
38.4
|
1.0
|
|
HA
|
A:THR251
|
3.9
|
66.8
|
1.0
|
|
N
|
A:THR250
|
3.9
|
69.6
|
1.0
|
|
N
|
A:THR251
|
4.0
|
54.6
|
1.0
|
|
H
|
A:PHE244
|
4.1
|
37.3
|
1.0
|
|
HA
|
A:LEU248
|
4.1
|
64.7
|
1.0
|
|
N
|
A:ASP247
|
4.2
|
54.7
|
1.0
|
|
CG
|
A:GLU243
|
4.2
|
36.3
|
1.0
|
|
CA
|
A:ASP247
|
4.2
|
54.0
|
1.0
|
|
CG
|
A:GLU252
|
4.3
|
45.2
|
1.0
|
|
CA
|
A:THR251
|
4.4
|
55.7
|
1.0
|
|
CB
|
A:ASP247
|
4.4
|
65.1
|
1.0
|
|
H
|
A:GLU252
|
4.4
|
49.7
|
1.0
|
|
CB
|
A:ASP245
|
4.4
|
43.4
|
1.0
|
|
N
|
A:ASP245
|
4.5
|
40.9
|
1.0
|
|
N
|
A:LEU248
|
4.5
|
53.8
|
1.0
|
|
O
|
A:HOH3212
|
4.5
|
51.2
|
1.0
|
|
HG3
|
A:GLU243
|
4.5
|
43.5
|
1.0
|
|
HA
|
A:THR250
|
4.6
|
67.5
|
1.0
|
|
HB3
|
A:ASP245
|
4.6
|
52.0
|
1.0
|
|
CA
|
A:GLU243
|
4.6
|
32.0
|
1.0
|
|
N
|
A:GLU252
|
4.6
|
41.4
|
1.0
|
|
HG2
|
A:GLU252
|
4.7
|
54.2
|
1.0
|
|
CA
|
A:LEU248
|
4.7
|
53.9
|
1.0
|
|
HG3
|
A:GLU252
|
4.7
|
54.2
|
1.0
|
|
HG2
|
A:GLU243
|
4.7
|
43.5
|
1.0
|
|
H
|
A:THR251
|
4.7
|
65.5
|
1.0
|
|
CG2
|
A:THR250
|
4.7
|
51.9
|
1.0
|
|
C
|
A:THR251
|
4.7
|
49.6
|
1.0
|
|
N
|
A:PHE244
|
4.7
|
31.1
|
1.0
|
|
CB
|
A:GLU243
|
4.8
|
35.3
|
1.0
|
|
H
|
A:GLY246
|
4.8
|
47.2
|
1.0
|
|
HB2
|
A:GLU243
|
4.8
|
42.4
|
1.0
|
|
C
|
A:LEU248
|
4.8
|
55.4
|
1.0
|
|
CA
|
A:ASP245
|
4.8
|
50.1
|
1.0
|
|
HG21
|
A:THR250
|
4.8
|
62.3
|
1.0
|
|
O
|
A:HOH3216
|
4.9
|
50.8
|
1.0
|
|
C
|
A:ASP245
|
4.9
|
51.3
|
1.0
|
|
N
|
A:GLY246
|
4.9
|
39.3
|
1.0
|
|
HG22
|
A:THR250
|
5.0
|
62.3
|
1.0
|
|
Calcium binding site 2 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 2 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2005
b:32.7
occ:1.00
|
OD1
|
A:ASN299
|
2.3
|
28.2
|
1.0
|
|
O
|
A:ARG303
|
2.4
|
26.6
|
1.0
|
|
OD1
|
A:ASP297
|
2.4
|
26.5
|
1.0
|
|
O
|
A:HOH3252
|
2.4
|
32.8
|
1.0
|
|
OD1
|
A:ASP305
|
2.4
|
42.6
|
1.0
|
|
OD2
|
A:ASP305
|
2.4
|
32.1
|
1.0
|
|
OD1
|
A:ASP301
|
2.5
|
37.1
|
1.0
|
|
CG
|
A:ASP305
|
2.8
|
27.6
|
1.0
|
|
CG
|
A:ASP301
|
3.2
|
38.4
|
1.0
|
|
OD2
|
A:ASP301
|
3.2
|
29.5
|
1.0
|
|
HB2
|
A:ARG303
|
3.3
|
41.5
|
1.0
|
|
CG
|
A:ASN299
|
3.3
|
35.0
|
1.0
|
|
C
|
A:ARG303
|
3.5
|
33.6
|
1.0
|
|
HD22
|
A:ASN299
|
3.5
|
33.9
|
1.0
|
|
CG
|
A:ASP297
|
3.5
|
39.2
|
1.0
|
|
HA
|
A:ASP297
|
3.6
|
35.7
|
1.0
|
|
H
|
A:ARG303
|
3.6
|
41.4
|
1.0
|
|
H
|
A:ASN299
|
3.6
|
35.5
|
1.0
|
|
HD23
|
A:LEU332
|
3.7
|
27.7
|
1.0
|
|
H
|
A:ASP301
|
3.8
|
38.7
|
1.0
|
|
ND2
|
A:ASN299
|
3.8
|
28.2
|
1.0
|
|
CB
|
A:ARG303
|
4.0
|
34.6
|
1.0
|
|
H
|
A:VAL298
|
4.1
|
32.0
|
1.0
|
|
CA
|
A:ARG303
|
4.1
|
34.7
|
1.0
|
|
H
|
A:GLN333
|
4.1
|
36.2
|
1.0
|
|
N
|
A:ARG303
|
4.2
|
34.5
|
1.0
|
|
CB
|
A:ASP305
|
4.2
|
30.0
|
1.0
|
|
HB2
|
A:ASP297
|
4.3
|
26.5
|
1.0
|
|
CB
|
A:ASP297
|
4.3
|
22.1
|
1.0
|
|
CA
|
A:ASP297
|
4.3
|
29.8
|
1.0
|
|
HB3
|
A:ARG303
|
4.3
|
41.5
|
1.0
|
|
OD2
|
A:ASP297
|
4.5
|
38.4
|
1.0
|
|
HD21
|
A:LEU332
|
4.5
|
27.7
|
1.0
|
|
N
|
A:ASN299
|
4.5
|
29.6
|
1.0
|
|
CD2
|
A:LEU332
|
4.5
|
23.1
|
1.0
|
|
C
|
A:HIS304
|
4.5
|
27.1
|
1.0
|
|
N
|
A:ASP305
|
4.5
|
25.6
|
1.0
|
|
HB3
|
A:GLN333
|
4.5
|
36.8
|
1.0
|
|
HB3
|
A:LEU332
|
4.6
|
37.8
|
1.0
|
|
CB
|
A:ASP301
|
4.6
|
41.7
|
1.0
|
|
N
|
A:VAL298
|
4.6
|
26.7
|
1.0
|
|
CB
|
A:ASN299
|
4.6
|
35.4
|
1.0
|
|
N
|
A:HIS304
|
4.6
|
36.1
|
1.0
|
|
HB2
|
A:ASP305
|
4.6
|
36.0
|
1.0
|
|
N
|
A:ASP301
|
4.6
|
32.2
|
1.0
|
|
HD21
|
A:ASN299
|
4.7
|
33.9
|
1.0
|
|
H
|
A:ASP305
|
4.7
|
30.8
|
1.0
|
|
HA
|
A:LEU332
|
4.7
|
42.9
|
1.0
|
|
O
|
A:HIS304
|
4.7
|
26.3
|
1.0
|
|
HB3
|
A:ASP305
|
4.8
|
36.0
|
1.0
|
|
O
|
A:GLN333
|
4.8
|
33.8
|
1.0
|
|
HA
|
A:HIS304
|
4.8
|
36.2
|
1.0
|
|
H
|
A:GLY300
|
4.8
|
43.9
|
1.0
|
|
HB3
|
A:ASN299
|
4.8
|
42.5
|
1.0
|
|
C
|
A:ASP297
|
4.8
|
30.1
|
1.0
|
|
N
|
A:GLN333
|
4.8
|
30.2
|
1.0
|
|
CA
|
A:ASP305
|
4.8
|
32.7
|
1.0
|
|
HB3
|
A:ASP301
|
4.9
|
50.0
|
1.0
|
|
HA
|
A:ASP305
|
4.9
|
39.2
|
1.0
|
|
HG23
|
A:VAL298
|
4.9
|
31.3
|
1.0
|
|
CA
|
A:HIS304
|
4.9
|
30.2
|
1.0
|
|
CA
|
A:ASN299
|
4.9
|
33.2
|
1.0
|
|
Calcium binding site 3 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 3 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2006
b:25.8
occ:1.00
|
O
|
A:TYR371
|
2.3
|
30.7
|
1.0
|
|
OD1
|
A:ASP367
|
2.3
|
38.6
|
1.0
|
|
O
|
A:HOH3294
|
2.4
|
22.3
|
1.0
|
|
OD1
|
A:ASP365
|
2.4
|
33.8
|
1.0
|
|
OD1
|
A:ASP369
|
2.4
|
36.6
|
1.0
|
|
OD2
|
A:ASP373
|
2.5
|
23.5
|
1.0
|
|
OD1
|
A:ASP373
|
2.5
|
37.3
|
1.0
|
|
CG
|
A:ASP373
|
2.8
|
28.0
|
1.0
|
|
CG
|
A:ASP369
|
3.4
|
36.0
|
1.0
|
|
C
|
A:TYR371
|
3.4
|
32.1
|
1.0
|
|
H
|
A:ASP367
|
3.5
|
36.2
|
1.0
|
|
CG
|
A:ASP367
|
3.5
|
37.8
|
1.0
|
|
H
|
A:TYR371
|
3.5
|
32.7
|
1.0
|
|
CG
|
A:ASP365
|
3.5
|
36.1
|
1.0
|
|
H
|
A:ASP369
|
3.5
|
31.3
|
1.0
|
|
HA
|
A:ASP365
|
3.6
|
40.2
|
1.0
|
|
HB2
|
A:TYR371
|
3.6
|
44.1
|
1.0
|
|
HD23
|
A:LEU393
|
3.7
|
30.7
|
1.0
|
|
OD2
|
A:ASP369
|
3.8
|
41.8
|
1.0
|
|
H
|
A:LEU366
|
3.9
|
48.9
|
1.0
|
|
H
|
A:GLY394
|
3.9
|
32.2
|
1.0
|
|
OD2
|
A:ASP367
|
4.0
|
36.7
|
1.0
|
|
HB3
|
A:LEU393
|
4.0
|
22.8
|
1.0
|
|
N
|
A:TYR371
|
4.1
|
27.3
|
1.0
|
|
CA
|
A:TYR371
|
4.2
|
30.4
|
1.0
|
|
H
|
A:ARG368
|
4.2
|
38.4
|
1.0
|
|
OD2
|
A:ASP365
|
4.2
|
36.8
|
1.0
|
|
N
|
A:ASP367
|
4.3
|
30.1
|
1.0
|
|
CA
|
A:ASP365
|
4.3
|
33.5
|
1.0
|
|
CB
|
A:TYR371
|
4.3
|
36.7
|
1.0
|
|
N
|
A:LEU366
|
4.3
|
40.7
|
1.0
|
|
CB
|
A:ASP373
|
4.3
|
26.8
|
1.0
|
|
N
|
A:ASP369
|
4.4
|
26.1
|
1.0
|
|
HA
|
A:ASN372
|
4.4
|
29.5
|
1.0
|
|
N
|
A:ASN372
|
4.5
|
30.0
|
1.0
|
|
CB
|
A:ASP365
|
4.5
|
30.1
|
1.0
|
|
CB
|
A:ASP369
|
4.5
|
33.0
|
1.0
|
|
C
|
A:ASN372
|
4.5
|
29.9
|
1.0
|
|
C
|
A:ASP365
|
4.6
|
30.3
|
1.0
|
|
N
|
A:ARG368
|
4.6
|
32.0
|
1.0
|
|
CD2
|
A:LEU393
|
4.6
|
25.6
|
1.0
|
|
HA
|
A:LEU393
|
4.6
|
29.4
|
1.0
|
|
HB3
|
A:ASP369
|
4.6
|
39.5
|
1.0
|
|
H
|
A:GLY370
|
4.6
|
40.8
|
1.0
|
|
N
|
A:GLY394
|
4.6
|
26.9
|
1.0
|
|
N
|
A:ASP373
|
4.7
|
27.3
|
1.0
|
|
HB3
|
A:TYR371
|
4.7
|
44.1
|
1.0
|
|
CB
|
A:ASP367
|
4.7
|
33.2
|
1.0
|
|
CA
|
A:ASN372
|
4.7
|
24.6
|
1.0
|
|
HB2
|
A:ASP373
|
4.7
|
32.1
|
1.0
|
|
HD21
|
A:LEU393
|
4.8
|
30.7
|
1.0
|
|
HB3
|
A:ASP373
|
4.8
|
32.1
|
1.0
|
|
O
|
A:ASN372
|
4.8
|
28.7
|
1.0
|
|
HB3
|
A:LEU366
|
4.8
|
35.3
|
1.0
|
|
CA
|
A:ASP367
|
4.9
|
31.2
|
1.0
|
|
H
|
A:ASP373
|
4.9
|
32.8
|
1.0
|
|
CB
|
A:LEU393
|
4.9
|
19.0
|
1.0
|
|
HB2
|
A:ASP365
|
4.9
|
36.2
|
1.0
|
|
O
|
A:GLY394
|
4.9
|
36.1
|
1.0
|
|
CA
|
A:ASP369
|
4.9
|
22.6
|
1.0
|
|
HD11
|
A:LEU393
|
4.9
|
32.9
|
1.0
|
|
C
|
A:ASP367
|
5.0
|
31.5
|
1.0
|
|
N
|
A:GLY370
|
5.0
|
34.0
|
1.0
|
|
Calcium binding site 4 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 4 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2007
b:26.6
occ:1.00
|
O
|
A:TYR432
|
2.3
|
25.0
|
1.0
|
|
OD1
|
A:ASN430
|
2.3
|
32.1
|
1.0
|
|
OD1
|
A:ASP428
|
2.3
|
31.1
|
1.0
|
|
OD1
|
A:ASP426
|
2.3
|
32.6
|
1.0
|
|
OD1
|
A:ASP434
|
2.4
|
33.5
|
1.0
|
|
OD2
|
A:ASP434
|
2.4
|
25.4
|
1.0
|
|
O
|
A:HOH3342
|
2.4
|
20.1
|
1.0
|
|
CG
|
A:ASP434
|
2.7
|
33.2
|
1.0
|
|
CG
|
A:ASN430
|
3.3
|
36.4
|
1.0
|
|
CG
|
A:ASP428
|
3.3
|
23.7
|
1.0
|
|
CG
|
A:ASP426
|
3.4
|
35.1
|
1.0
|
|
H
|
A:TYR432
|
3.4
|
27.9
|
1.0
|
|
H
|
A:ASN430
|
3.4
|
49.4
|
1.0
|
|
C
|
A:TYR432
|
3.4
|
28.5
|
1.0
|
|
HA
|
A:ASP426
|
3.5
|
36.0
|
1.0
|
|
HB2
|
A:TYR432
|
3.5
|
34.8
|
1.0
|
|
H
|
A:ASP428
|
3.5
|
37.7
|
1.0
|
|
OD2
|
A:ASP428
|
3.7
|
29.5
|
1.0
|
|
HD22
|
A:ASN430
|
3.8
|
35.3
|
1.0
|
|
H
|
A:ALA450
|
3.9
|
25.3
|
1.0
|
|
ND2
|
A:ASN430
|
3.9
|
29.4
|
1.0
|
|
H
|
A:ILE427
|
4.0
|
32.2
|
1.0
|
|
HB1
|
A:ALA450
|
4.1
|
31.8
|
1.0
|
|
N
|
A:TYR432
|
4.1
|
23.3
|
1.0
|
|
CA
|
A:TYR432
|
4.1
|
28.7
|
1.0
|
|
OD2
|
A:ASP426
|
4.1
|
32.1
|
1.0
|
|
H
|
A:ASP429
|
4.2
|
51.9
|
1.0
|
|
CA
|
A:ASP426
|
4.2
|
30.0
|
1.0
|
|
CB
|
A:ASP434
|
4.2
|
29.2
|
1.0
|
|
CB
|
A:TYR432
|
4.2
|
29.0
|
1.0
|
|
HG2
|
A:ARG449
|
4.2
|
44.9
|
1.0
|
|
N
|
A:ASN430
|
4.2
|
41.2
|
1.0
|
|
CB
|
A:ASP426
|
4.3
|
24.9
|
1.0
|
|
O
|
A:ALA450
|
4.3
|
17.1
|
1.0
|
|
HB3
|
A:ASN430
|
4.3
|
36.6
|
1.0
|
|
CB
|
A:ASN430
|
4.3
|
30.5
|
1.0
|
|
N
|
A:ASP428
|
4.4
|
31.4
|
1.0
|
|
N
|
A:ILE427
|
4.4
|
26.8
|
1.0
|
|
HB2
|
A:ASP426
|
4.5
|
29.9
|
1.0
|
|
N
|
A:PRO433
|
4.5
|
29.1
|
1.0
|
|
N
|
A:ALA450
|
4.6
|
21.1
|
1.0
|
|
HA
|
A:PRO433
|
4.6
|
31.0
|
1.0
|
|
N
|
A:ASP434
|
4.6
|
28.3
|
1.0
|
|
C
|
A:PRO433
|
4.6
|
27.1
|
1.0
|
|
HB3
|
A:TYR432
|
4.6
|
34.8
|
1.0
|
|
CB
|
A:ASP428
|
4.6
|
23.1
|
1.0
|
|
N
|
A:ASP429
|
4.6
|
43.3
|
1.0
|
|
HB2
|
A:ASP434
|
4.6
|
35.0
|
1.0
|
|
C
|
A:ASP426
|
4.6
|
30.5
|
1.0
|
|
HG23
|
A:ILE427
|
4.6
|
38.5
|
1.0
|
|
HA
|
A:ARG449
|
4.6
|
29.1
|
1.0
|
|
HD21
|
A:ASN430
|
4.7
|
35.3
|
1.0
|
|
HB3
|
A:ASP434
|
4.7
|
35.0
|
1.0
|
|
H
|
A:GLY431
|
4.7
|
38.2
|
1.0
|
|
H
|
A:ASP434
|
4.7
|
33.9
|
1.0
|
|
HB3
|
A:ARG449
|
4.7
|
21.9
|
1.0
|
|
CA
|
A:ASN430
|
4.8
|
29.8
|
1.0
|
|
CA
|
A:PRO433
|
4.8
|
25.8
|
1.0
|
|
CA
|
A:ASP428
|
4.9
|
28.5
|
1.0
|
|
CA
|
A:ASP434
|
4.9
|
26.5
|
1.0
|
|
HA
|
A:ASP434
|
4.9
|
31.8
|
1.0
|
|
HB3
|
A:ASP428
|
4.9
|
27.8
|
1.0
|
|
CB
|
A:ALA450
|
4.9
|
26.5
|
1.0
|
|
N
|
A:GLY431
|
4.9
|
31.9
|
1.0
|
|
O
|
A:PRO433
|
5.0
|
34.8
|
1.0
|
|
C
|
A:ASP428
|
5.0
|
39.2
|
1.0
|
|
Calcium binding site 5 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 5 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca2002
b:67.2
occ:1.00
|
OD1
|
B:ASP126
|
2.4
|
74.1
|
1.0
|
|
OD1
|
B:ASP127
|
2.4
|
52.1
|
1.0
|
|
O
|
B:HOH3023
|
2.4
|
50.4
|
1.0
|
|
O
|
B:HOH3022
|
2.4
|
44.1
|
1.0
|
|
OD2
|
B:ASP126
|
2.4
|
77.8
|
1.0
|
|
O
|
B:SER123
|
2.5
|
48.0
|
1.0
|
|
CG
|
B:ASP126
|
2.7
|
72.3
|
1.0
|
|
O
|
B:MET335
|
2.8
|
44.2
|
1.0
|
|
HA
|
B:MET124
|
3.2
|
41.0
|
1.0
|
|
CG
|
B:ASP127
|
3.6
|
48.4
|
1.0
|
|
H
|
B:ASP127
|
3.7
|
45.1
|
1.0
|
|
C
|
B:SER123
|
3.7
|
46.0
|
1.0
|
|
HA
|
B:ASP336
|
3.9
|
51.1
|
1.0
|
|
H
|
B:ASP126
|
3.9
|
57.4
|
1.0
|
|
C
|
B:MET335
|
4.0
|
43.5
|
1.0
|
|
CA
|
B:MET124
|
4.0
|
34.2
|
1.0
|
|
OD2
|
B:ASP127
|
4.2
|
50.2
|
1.0
|
|
O
|
B:HOH3094
|
4.2
|
74.2
|
1.0
|
|
CB
|
B:ASP126
|
4.2
|
63.0
|
1.0
|
|
O
|
B:HOH3025
|
4.2
|
39.3
|
1.0
|
|
N
|
B:ASP127
|
4.3
|
37.6
|
1.0
|
|
N
|
B:MET124
|
4.3
|
44.3
|
1.0
|
|
HE1
|
B:MET335
|
4.4
|
78.1
|
1.0
|
|
C
|
B:MET124
|
4.5
|
33.5
|
1.0
|
|
OD2
|
B:ASP251
|
4.5
|
44.7
|
1.0
|
|
N
|
B:ASP126
|
4.5
|
47.8
|
1.0
|
|
HB3
|
B:MET335
|
4.6
|
61.9
|
1.0
|
|
HB3
|
I:PRO497
|
4.6
|
98.0
|
1.0
|
|
HB2
|
B:SER123
|
4.6
|
55.9
|
1.0
|
|
HB2
|
B:ASP126
|
4.6
|
75.6
|
1.0
|
|
HB3
|
B:ASP126
|
4.7
|
75.6
|
1.0
|
|
CB
|
B:ASP127
|
4.7
|
39.9
|
1.0
|
|
CA
|
B:ASP336
|
4.7
|
42.6
|
1.0
|
|
CA
|
B:ASP126
|
4.8
|
56.4
|
1.0
|
|
HB2
|
B:ASP127
|
4.8
|
47.9
|
1.0
|
|
H
|
B:LYS125
|
4.8
|
46.5
|
1.0
|
|
N
|
B:ASP336
|
4.8
|
40.3
|
1.0
|
|
N
|
B:LYS125
|
4.8
|
38.8
|
1.0
|
|
HA
|
B:MET335
|
4.9
|
55.3
|
1.0
|
|
SD
|
B:MET124
|
4.9
|
39.8
|
1.0
|
|
CA
|
B:SER123
|
4.9
|
40.8
|
1.0
|
|
HA
|
B:SER123
|
4.9
|
49.0
|
1.0
|
|
C
|
B:ASP126
|
4.9
|
47.8
|
1.0
|
|
O
|
B:MET124
|
4.9
|
37.0
|
1.0
|
|
CA
|
B:MET335
|
5.0
|
46.1
|
1.0
|
|
Calcium binding site 6 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 6 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca2003
b:28.6
occ:1.00
|
O
|
B:PRO219
|
2.2
|
22.9
|
1.0
|
|
OD1
|
B:ASN215
|
2.3
|
30.5
|
1.0
|
|
OD1
|
B:ASP217
|
2.3
|
30.6
|
1.0
|
|
OE1
|
B:GLU220
|
2.4
|
37.7
|
1.0
|
|
OD2
|
B:ASP158
|
2.4
|
35.8
|
1.0
|
|
O
|
B:ASP217
|
2.4
|
35.9
|
1.0
|
|
HA
|
B:GLU220
|
2.9
|
33.6
|
1.0
|
|
CG
|
B:ASP217
|
3.2
|
35.2
|
1.0
|
|
C
|
B:PRO219
|
3.3
|
24.4
|
1.0
|
|
CD
|
B:GLU220
|
3.3
|
32.8
|
1.0
|
|
CG
|
B:ASN215
|
3.4
|
26.8
|
1.0
|
|
HB2
|
B:ASP158
|
3.4
|
44.2
|
1.0
|
|
C
|
B:ASP217
|
3.4
|
31.8
|
1.0
|
|
CG
|
B:ASP158
|
3.4
|
34.0
|
1.0
|
|
HD22
|
B:ASN215
|
3.5
|
36.6
|
1.0
|
|
H
|
B:ASP217
|
3.6
|
32.1
|
1.0
|
|
OD2
|
B:ASP217
|
3.8
|
39.5
|
1.0
|
|
ND2
|
B:ASN215
|
3.8
|
30.5
|
1.0
|
|
CA
|
B:GLU220
|
3.8
|
28.0
|
1.0
|
|
CB
|
B:ASP158
|
3.8
|
36.8
|
1.0
|
|
OE2
|
B:GLU220
|
3.9
|
35.3
|
1.0
|
|
HB3
|
B:ASP158
|
4.0
|
44.2
|
1.0
|
|
N
|
B:GLU220
|
4.0
|
27.1
|
1.0
|
|
CA
|
B:ASP217
|
4.1
|
32.2
|
1.0
|
|
N
|
B:ASP217
|
4.1
|
26.8
|
1.0
|
|
O
|
B:ALA218
|
4.1
|
34.2
|
1.0
|
|
C
|
B:ALA218
|
4.2
|
25.8
|
1.0
|
|
HD2
|
B:HIS255
|
4.2
|
32.5
|
1.0
|
|
NE2
|
B:HIS255
|
4.2
|
24.1
|
1.0
|
|
CB
|
B:ASP217
|
4.2
|
35.1
|
1.0
|
|
HB3
|
B:TYR164
|
4.3
|
39.3
|
1.0
|
|
N
|
B:PRO219
|
4.4
|
28.9
|
1.0
|
|
CG
|
B:GLU220
|
4.4
|
32.2
|
1.0
|
|
N
|
B:ALA218
|
4.4
|
25.9
|
1.0
|
|
HD1
|
B:TYR164
|
4.4
|
38.6
|
1.0
|
|
CA
|
B:PRO219
|
4.5
|
32.0
|
1.0
|
|
CD2
|
B:HIS255
|
4.5
|
27.1
|
1.0
|
|
HG2
|
B:GLU220
|
4.5
|
38.7
|
1.0
|
|
OD1
|
B:ASP158
|
4.6
|
28.6
|
1.0
|
|
CB
|
B:GLU220
|
4.6
|
26.3
|
1.0
|
|
HG2
|
B:PRO219
|
4.7
|
41.1
|
1.0
|
|
HB2
|
B:ASN215
|
4.7
|
30.0
|
1.0
|
|
HD21
|
B:ASN215
|
4.7
|
36.6
|
1.0
|
|
HB3
|
B:GLU220
|
4.7
|
31.6
|
1.0
|
|
CB
|
B:ASN215
|
4.7
|
25.0
|
1.0
|
|
HB2
|
B:ASP217
|
4.7
|
42.1
|
1.0
|
|
CA
|
B:ALA218
|
4.8
|
28.8
|
1.0
|
|
H
|
B:GLU220
|
4.9
|
32.6
|
1.0
|
|
HA
|
B:ALA218
|
4.9
|
34.5
|
1.0
|
|
HD2
|
B:PRO219
|
4.9
|
38.1
|
1.0
|
|
C
|
B:GLU220
|
4.9
|
34.4
|
1.0
|
|
HB3
|
B:ASP217
|
4.9
|
42.1
|
1.0
|
|
Calcium binding site 7 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 7 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2004
b:66.8
occ:1.00
|
O
|
C:ASP247
|
2.4
|
75.7
|
1.0
|
|
OE2
|
C:GLU243
|
2.4
|
69.5
|
1.0
|
|
O
|
C:THR250
|
2.4
|
65.0
|
1.0
|
|
OD1
|
C:ASP245
|
2.4
|
85.9
|
1.0
|
|
OD2
|
C:ASP245
|
2.4
|
96.4
|
1.0
|
|
OE1
|
C:GLU243
|
2.4
|
71.2
|
1.0
|
|
OE1
|
C:GLU252
|
2.4
|
63.0
|
1.0
|
|
OG1
|
C:THR250
|
2.4
|
57.8
|
1.0
|
|
OE2
|
C:GLU252
|
2.4
|
58.3
|
1.0
|
|
CG
|
C:ASP245
|
2.6
|
86.7
|
1.0
|
|
CD
|
C:GLU243
|
2.7
|
68.7
|
1.0
|
|
CD
|
C:GLU252
|
2.7
|
58.3
|
1.0
|
|
C
|
C:THR250
|
3.0
|
62.3
|
1.0
|
|
CB
|
C:THR250
|
3.4
|
63.0
|
1.0
|
|
H
|
C:THR250
|
3.5
|
84.8
|
1.0
|
|
C
|
C:ASP247
|
3.5
|
72.6
|
1.0
|
|
H
|
C:ASP245
|
3.6
|
87.9
|
1.0
|
|
HB
|
C:THR250
|
3.6
|
75.6
|
1.0
|
|
CA
|
C:THR250
|
3.6
|
64.0
|
1.0
|
|
HA
|
C:THR251
|
3.7
|
74.2
|
1.0
|
|
HB3
|
C:ASP247
|
3.7
|
0.6
|
1.0
|
|
N
|
C:THR251
|
3.8
|
60.0
|
1.0
|
|
HA
|
C:GLU243
|
3.9
|
79.5
|
1.0
|
|
N
|
C:THR250
|
3.9
|
70.7
|
1.0
|
|
CB
|
C:ASP245
|
4.0
|
79.8
|
1.0
|
|
H
|
C:ASP247
|
4.1
|
100.0
|
1.0
|
|
H
|
C:PHE244
|
4.2
|
67.1
|
1.0
|
|
CG
|
C:GLU243
|
4.2
|
68.6
|
1.0
|
|
HA
|
C:LEU248
|
4.2
|
87.5
|
1.0
|
|
CA
|
C:THR251
|
4.2
|
61.9
|
1.0
|
|
CG
|
C:GLU252
|
4.2
|
54.8
|
1.0
|
|
HB3
|
C:ASP245
|
4.3
|
95.8
|
1.0
|
|
N
|
C:ASP247
|
4.3
|
83.3
|
1.0
|
|
CA
|
C:ASP247
|
4.3
|
79.6
|
1.0
|
|
H
|
C:GLU252
|
4.3
|
56.9
|
1.0
|
|
H
|
C:GLY246
|
4.4
|
0.6
|
1.0
|
|
N
|
C:ASP245
|
4.4
|
73.2
|
1.0
|
|
CB
|
C:ASP247
|
4.4
|
86.3
|
1.0
|
|
HG3
|
C:GLU243
|
4.5
|
82.3
|
1.0
|
|
H
|
C:THR251
|
4.5
|
72.0
|
1.0
|
|
N
|
C:GLU252
|
4.6
|
47.5
|
1.0
|
|
N
|
C:LEU248
|
4.6
|
70.3
|
1.0
|
|
HG2
|
C:GLU252
|
4.6
|
65.8
|
1.0
|
|
HA
|
C:THR250
|
4.6
|
76.8
|
1.0
|
|
C
|
C:THR251
|
4.6
|
55.9
|
1.0
|
|
HG3
|
C:GLU252
|
4.6
|
65.8
|
1.0
|
|
O
|
C:HOH3103
|
4.6
|
54.1
|
1.0
|
|
CA
|
C:ASP245
|
4.7
|
79.5
|
1.0
|
|
HB2
|
C:ASP245
|
4.7
|
95.8
|
1.0
|
|
HG2
|
C:GLU243
|
4.7
|
82.3
|
1.0
|
|
CA
|
C:LEU248
|
4.7
|
73.0
|
1.0
|
|
N
|
C:GLY246
|
4.7
|
93.8
|
1.0
|
|
CA
|
C:GLU243
|
4.7
|
66.2
|
1.0
|
|
CG2
|
C:THR250
|
4.8
|
69.7
|
1.0
|
|
N
|
C:PHE244
|
4.8
|
56.0
|
1.0
|
|
C
|
C:LEU248
|
4.9
|
75.3
|
1.0
|
|
CB
|
C:GLU243
|
4.9
|
67.0
|
1.0
|
|
HB2
|
C:GLU243
|
4.9
|
80.4
|
1.0
|
|
HG21
|
C:THR250
|
4.9
|
83.7
|
1.0
|
|
C
|
C:ASP245
|
4.9
|
85.2
|
1.0
|
|
HG22
|
C:THR250
|
5.0
|
83.7
|
1.0
|
|
Calcium binding site 8 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 8 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2005
b:55.2
occ:1.00
|
O
|
C:ARG303
|
2.3
|
53.2
|
1.0
|
|
OD1
|
C:ASN299
|
2.3
|
43.7
|
1.0
|
|
O
|
C:HOH3129
|
2.4
|
51.5
|
1.0
|
|
OD1
|
C:ASP301
|
2.4
|
78.2
|
1.0
|
|
OD1
|
C:ASP297
|
2.4
|
60.2
|
1.0
|
|
OD1
|
C:ASP305
|
2.4
|
41.2
|
1.0
|
|
OD2
|
C:ASP305
|
2.4
|
55.5
|
1.0
|
|
CG
|
C:ASP305
|
2.7
|
46.6
|
1.0
|
|
CG
|
C:ASP301
|
3.2
|
76.3
|
1.0
|
|
OD2
|
C:ASP301
|
3.3
|
76.8
|
1.0
|
|
HA
|
C:ASP297
|
3.4
|
59.3
|
1.0
|
|
C
|
C:ARG303
|
3.4
|
53.5
|
1.0
|
|
CG
|
C:ASP297
|
3.5
|
54.2
|
1.0
|
|
CG
|
C:ASN299
|
3.5
|
47.8
|
1.0
|
|
HB2
|
C:ARG303
|
3.5
|
74.3
|
1.0
|
|
H
|
C:ARG303
|
3.5
|
71.0
|
1.0
|
|
H
|
C:ASN299
|
3.6
|
61.9
|
1.0
|
|
H
|
C:ASP301
|
3.7
|
85.1
|
1.0
|
|
HD22
|
C:ASN299
|
3.7
|
54.0
|
1.0
|
|
H
|
C:VAL298
|
3.9
|
65.1
|
1.0
|
|
HD23
|
C:LEU332
|
3.9
|
57.2
|
1.0
|
|
ND2
|
C:ASN299
|
4.0
|
45.0
|
1.0
|
|
N
|
C:ARG303
|
4.1
|
59.1
|
1.0
|
|
CA
|
C:ARG303
|
4.1
|
58.8
|
1.0
|
|
HB2
|
C:ASP297
|
4.1
|
64.5
|
1.0
|
|
CA
|
C:ASP297
|
4.1
|
49.4
|
1.0
|
|
CB
|
C:ASP297
|
4.1
|
53.7
|
1.0
|
|
CB
|
C:ASP305
|
4.2
|
44.2
|
1.0
|
|
CB
|
C:ARG303
|
4.2
|
61.9
|
1.0
|
|
H
|
C:GLN333
|
4.3
|
49.0
|
1.0
|
|
OD2
|
C:ASP297
|
4.4
|
55.5
|
1.0
|
|
N
|
C:VAL298
|
4.4
|
54.3
|
1.0
|
|
N
|
C:ASN299
|
4.4
|
51.6
|
1.0
|
|
C
|
C:HIS304
|
4.4
|
44.1
|
1.0
|
|
N
|
C:ASP305
|
4.4
|
45.9
|
1.0
|
|
N
|
C:HIS304
|
4.5
|
53.0
|
1.0
|
|
N
|
C:ASP301
|
4.5
|
71.0
|
1.0
|
|
HB3
|
C:ARG303
|
4.5
|
74.3
|
1.0
|
|
HB2
|
C:ASP305
|
4.5
|
53.0
|
1.0
|
|
H
|
C:ASP305
|
4.5
|
55.1
|
1.0
|
|
CB
|
C:ASP301
|
4.5
|
70.9
|
1.0
|
|
HB3
|
C:GLN333
|
4.6
|
57.4
|
1.0
|
|
HA
|
C:HIS304
|
4.6
|
53.9
|
1.0
|
|
C
|
C:ASP297
|
4.6
|
54.7
|
1.0
|
|
H
|
C:GLY300
|
4.6
|
78.7
|
1.0
|
|
O
|
C:HIS304
|
4.7
|
46.5
|
1.0
|
|
H
|
C:GLY302
|
4.7
|
71.7
|
1.0
|
|
HG23
|
C:VAL298
|
4.7
|
64.2
|
1.0
|
|
CB
|
C:ASN299
|
4.7
|
46.1
|
1.0
|
|
HD21
|
C:LEU332
|
4.7
|
57.2
|
1.0
|
|
HB3
|
C:ASP305
|
4.7
|
53.0
|
1.0
|
|
CA
|
C:HIS304
|
4.8
|
44.9
|
1.0
|
|
CA
|
C:ASP305
|
4.8
|
45.5
|
1.0
|
|
CD2
|
C:LEU332
|
4.8
|
47.6
|
1.0
|
|
HA
|
C:ASP305
|
4.8
|
54.6
|
1.0
|
|
HD21
|
C:ASN299
|
4.9
|
54.0
|
1.0
|
|
HB3
|
C:ASP301
|
4.9
|
85.0
|
1.0
|
|
HB3
|
C:LEU332
|
4.9
|
56.1
|
1.0
|
|
N
|
C:GLY300
|
4.9
|
65.6
|
1.0
|
|
HA
|
C:LEU332
|
4.9
|
57.5
|
1.0
|
|
CA
|
C:ASN299
|
4.9
|
50.4
|
1.0
|
|
CA
|
C:ASP301
|
5.0
|
66.1
|
1.0
|
|
N
|
C:GLY302
|
5.0
|
59.8
|
1.0
|
|
Calcium binding site 9 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 9 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2006
b:49.1
occ:1.00
|
O
|
C:TYR371
|
2.3
|
45.4
|
1.0
|
|
OD1
|
C:ASP367
|
2.3
|
59.0
|
1.0
|
|
O
|
C:HOH3154
|
2.4
|
38.5
|
1.0
|
|
OD1
|
C:ASP369
|
2.4
|
54.3
|
1.0
|
|
OD1
|
C:ASP365
|
2.4
|
59.6
|
1.0
|
|
OD2
|
C:ASP373
|
2.5
|
40.2
|
1.0
|
|
OD1
|
C:ASP373
|
2.5
|
47.6
|
1.0
|
|
CG
|
C:ASP373
|
2.8
|
45.9
|
1.0
|
|
H
|
C:ASP367
|
3.3
|
76.6
|
1.0
|
|
CG
|
C:ASP369
|
3.4
|
56.3
|
1.0
|
|
CG
|
C:ASP367
|
3.4
|
60.6
|
1.0
|
|
HA
|
C:ASP365
|
3.5
|
66.9
|
1.0
|
|
C
|
C:TYR371
|
3.5
|
46.8
|
1.0
|
|
H
|
C:TYR371
|
3.6
|
62.4
|
1.0
|
|
CG
|
C:ASP365
|
3.6
|
61.4
|
1.0
|
|
H
|
C:LEU366
|
3.7
|
60.1
|
1.0
|
|
H
|
C:ASP369
|
3.7
|
70.6
|
1.0
|
|
OD2
|
C:ASP369
|
3.7
|
54.5
|
1.0
|
|
HD23
|
C:LEU393
|
3.8
|
49.1
|
1.0
|
|
HB2
|
C:TYR371
|
3.9
|
58.3
|
1.0
|
|
OD2
|
C:ASP367
|
3.9
|
57.5
|
1.0
|
|
H
|
C:GLY394
|
3.9
|
51.9
|
1.0
|
|
HB3
|
C:LEU393
|
4.1
|
53.3
|
1.0
|
|
N
|
C:LEU366
|
4.1
|
50.1
|
1.0
|
|
N
|
C:ASP367
|
4.2
|
63.9
|
1.0
|
|
N
|
C:TYR371
|
4.2
|
52.0
|
1.0
|
|
CA
|
C:ASP365
|
4.2
|
55.8
|
1.0
|
|
HA
|
C:ASN372
|
4.3
|
53.5
|
1.0
|
|
CA
|
C:TYR371
|
4.3
|
46.8
|
1.0
|
|
CB
|
C:ASP373
|
4.3
|
44.1
|
1.0
|
|
H
|
C:GLY370
|
4.4
|
73.4
|
1.0
|
|
H
|
C:ARG368
|
4.4
|
75.9
|
1.0
|
|
OD2
|
C:ASP365
|
4.4
|
66.6
|
1.0
|
|
C
|
C:ASP365
|
4.5
|
56.4
|
1.0
|
|
C
|
C:ASN372
|
4.5
|
49.1
|
1.0
|
|
N
|
C:ASN372
|
4.5
|
46.9
|
1.0
|
|
HB3
|
C:LEU366
|
4.5
|
51.9
|
1.0
|
|
CB
|
C:ASP365
|
4.5
|
56.3
|
1.0
|
|
N
|
C:ASP369
|
4.5
|
58.9
|
1.0
|
|
CB
|
C:TYR371
|
4.6
|
48.5
|
1.0
|
|
HA
|
C:LEU393
|
4.6
|
56.2
|
1.0
|
|
CA
|
C:ASN372
|
4.7
|
44.6
|
1.0
|
|
N
|
C:ASP373
|
4.7
|
43.4
|
1.0
|
|
CB
|
C:ASP369
|
4.7
|
57.2
|
1.0
|
|
CB
|
C:ASP367
|
4.7
|
61.5
|
1.0
|
|
N
|
C:GLY394
|
4.7
|
43.2
|
1.0
|
|
CD2
|
C:LEU393
|
4.7
|
40.9
|
1.0
|
|
N
|
C:ARG368
|
4.7
|
63.2
|
1.0
|
|
HB2
|
C:ASP373
|
4.7
|
52.9
|
1.0
|
|
HB3
|
C:ASP373
|
4.7
|
52.9
|
1.0
|
|
O
|
C:ASN372
|
4.7
|
53.2
|
1.0
|
|
HB3
|
C:ASP369
|
4.8
|
68.6
|
1.0
|
|
CA
|
C:ASP367
|
4.8
|
63.9
|
1.0
|
|
H
|
C:ASP373
|
4.9
|
52.0
|
1.0
|
|
HD11
|
C:LEU393
|
4.9
|
57.7
|
1.0
|
|
HD21
|
C:LEU393
|
4.9
|
49.1
|
1.0
|
|
CB
|
C:LEU393
|
4.9
|
44.4
|
1.0
|
|
HB2
|
C:ASP365
|
5.0
|
67.5
|
1.0
|
|
O
|
C:GLY394
|
5.0
|
51.3
|
1.0
|
|
N
|
C:GLY370
|
5.0
|
61.2
|
1.0
|
|
C
|
C:ASP367
|
5.0
|
64.5
|
1.0
|
|
Calcium binding site 10 out
of 12 in 3zdy
Go back to
Calcium Binding Sites List in 3zdy
Calcium binding site 10 out
of 12 in the Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Integrin Alphaiib BETA3 Headpiece and Rgd Peptide Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2007
b:39.4
occ:1.00
|
O
|
C:TYR432
|
2.3
|
50.1
|
1.0
|
|
OD1
|
C:ASP428
|
2.3
|
62.1
|
1.0
|
|
OD1
|
C:ASN430
|
2.3
|
48.0
|
1.0
|
|
OD1
|
C:ASP426
|
2.4
|
39.7
|
1.0
|
|
OD1
|
C:ASP434
|
2.4
|
43.5
|
1.0
|
|
OD2
|
C:ASP434
|
2.4
|
37.0
|
1.0
|
|
O
|
C:HOH3184
|
2.4
|
35.8
|
1.0
|
|
CG
|
C:ASP434
|
2.7
|
39.8
|
1.0
|
|
CG
|
C:ASN430
|
3.3
|
48.8
|
1.0
|
|
CG
|
C:ASP428
|
3.3
|
55.6
|
1.0
|
|
HA
|
C:ASP426
|
3.4
|
50.7
|
1.0
|
|
C
|
C:TYR432
|
3.4
|
48.8
|
1.0
|
|
H
|
C:TYR432
|
3.4
|
58.6
|
1.0
|
|
CG
|
C:ASP426
|
3.5
|
44.8
|
1.0
|
|
H
|
C:ASP428
|
3.5
|
69.1
|
1.0
|
|
H
|
C:ASN430
|
3.6
|
69.6
|
1.0
|
|
HB2
|
C:TYR432
|
3.6
|
49.8
|
1.0
|
|
HD22
|
C:ASN430
|
3.7
|
47.0
|
1.0
|
|
OD2
|
C:ASP428
|
3.7
|
54.6
|
1.0
|
|
H
|
C:ALA450
|
3.8
|
36.8
|
1.0
|
|
HB1
|
C:ALA450
|
3.9
|
47.3
|
1.0
|
|
ND2
|
C:ASN430
|
3.9
|
39.2
|
1.0
|
|
H
|
C:ILE427
|
3.9
|
51.3
|
1.0
|
|
N
|
C:TYR432
|
4.1
|
48.8
|
1.0
|
|
CA
|
C:TYR432
|
4.1
|
44.5
|
1.0
|
|
CA
|
C:ASP426
|
4.1
|
42.2
|
1.0
|
|
CB
|
C:ASP434
|
4.2
|
30.2
|
1.0
|
|
CB
|
C:ASP426
|
4.2
|
38.0
|
1.0
|
|
O
|
C:ALA450
|
4.2
|
37.1
|
1.0
|
|
CB
|
C:TYR432
|
4.2
|
41.5
|
1.0
|
|
OD2
|
C:ASP426
|
4.3
|
55.5
|
1.0
|
|
HB2
|
C:ASP426
|
4.3
|
45.5
|
1.0
|
|
N
|
C:ASP428
|
4.4
|
57.6
|
1.0
|
|
HG2
|
C:ARG449
|
4.4
|
52.7
|
1.0
|
|
N
|
C:ASN430
|
4.4
|
58.0
|
1.0
|
|
H
|
C:ASP429
|
4.4
|
74.9
|
1.0
|
|
HB3
|
C:ASN430
|
4.4
|
59.0
|
1.0
|
|
N
|
C:ILE427
|
4.4
|
42.8
|
1.0
|
|
CB
|
C:ASN430
|
4.4
|
49.1
|
1.0
|
|
N
|
C:ALA450
|
4.4
|
30.7
|
1.0
|
|
N
|
C:PRO433
|
4.5
|
51.9
|
1.0
|
|
N
|
C:ASP434
|
4.5
|
40.6
|
1.0
|
|
C
|
C:PRO433
|
4.5
|
51.5
|
1.0
|
|
HG23
|
C:ILE427
|
4.5
|
44.7
|
1.0
|
|
HB3
|
C:TYR432
|
4.5
|
49.8
|
1.0
|
|
HA
|
C:PRO433
|
4.5
|
64.1
|
1.0
|
|
C
|
C:ASP426
|
4.6
|
44.6
|
1.0
|
|
HA
|
C:ARG449
|
4.6
|
40.5
|
1.0
|
|
CB
|
C:ASP428
|
4.6
|
50.3
|
1.0
|
|
HB2
|
C:ASP434
|
4.6
|
36.3
|
1.0
|
|
H
|
C:ASP434
|
4.6
|
48.7
|
1.0
|
|
HB3
|
C:ARG449
|
4.7
|
37.2
|
1.0
|
|
HD21
|
C:ASN430
|
4.7
|
47.0
|
1.0
|
|
HB3
|
C:ASP434
|
4.7
|
36.3
|
1.0
|
|
CA
|
C:PRO433
|
4.7
|
53.4
|
1.0
|
|
N
|
C:ASP429
|
4.7
|
62.4
|
1.0
|
|
CB
|
C:ALA450
|
4.7
|
39.4
|
1.0
|
|
H
|
C:GLY431
|
4.8
|
66.7
|
1.0
|
|
CA
|
C:ASP434
|
4.8
|
36.1
|
1.0
|
|
HA
|
C:ASP434
|
4.8
|
43.3
|
1.0
|
|
O
|
C:PRO433
|
4.9
|
51.9
|
1.0
|
|
CA
|
C:ASN430
|
4.9
|
52.0
|
1.0
|
|
HB3
|
C:ASP428
|
4.9
|
60.3
|
1.0
|
|
CA
|
C:ASP428
|
4.9
|
58.7
|
1.0
|
|
CA
|
C:ALA450
|
5.0
|
33.1
|
1.0
|
|
Reference:
J.Zhu,
J.Zhu,
T.A.Springer.
Complete Integrin Headpiece Opening in Eight Steps. J.Cell Biol. V. 201 1053 2013.
ISSN: ISSN 0021-9525
PubMed: 23798730
DOI: 10.1083/JCB.201212037
Page generated: Sat Dec 12 04:36:38 2020
|
