Calcium in PDB 3znx: Crystal Structure of the Otu Domain of Otulin D336A Mutant

All present enzymatic activity of Crystal Structure of the Otu Domain of Otulin D336A Mutant:
3.4.19.12;

The structure of Crystal Structure of the Otu Domain of Otulin D336A Mutant, PDB code: 3znx was solved by K.Keusekotten, P.R.Elliott, L.Glockner, Y.Kulathu, T.Wauer, D.Krappmann, K.Hofmann, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.47 / 1.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.807, 72.197, 94.843, 90.00, 90.00, 90.00
R / Rfree (%)	12.163 / 15.894

The structure of Crystal Structure of the Otu Domain of Otulin D336A Mutant also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the Crystal Structure of the Otu Domain of Otulin D336A Mutant (pdb code 3znx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Otu Domain of Otulin D336A Mutant, PDB code: 3znx:

Calcium binding site 1 out of 1 in the Crystal Structure of the Otu Domain of Otulin D336A Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Otu Domain of Otulin D336A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1346 b:35.6 occ:1.00 O A:HOH2208 2.3 23.7 1.0 O A:HOH2212 2.4 34.7 1.0 OE1 A:GLN212 2.5 32.5 0.5 OE2 A:GLU209 2.9 0.0 1.0 CD A:GLN212 3.5 32.7 0.5 CD A:GLU209 3.6 99.5 1.0 OE1 A:GLU209 3.7 0.5 1.0 NE2 A:GLN212 3.8 32.5 0.5 O A:HOH2063 4.5 35.5 1.0 O A:HOH2209 4.6 31.4 1.0 CG A:GLN212 4.9 33.2 0.5

K.Keusekotten, P.R.Elliott, L.Glockner, B.K.Fiil, R.B.Damgaard, Y.Kulathu, T.Wauer, M.K.Hospenthal, M.Gyrd-Hansen, D.Krappmann, K.Hofmann, D.Komander. Otulin Antagonizes Lubac Signaling By Specifically Hydrolyzing MET1-Linked Polyubiquitin. Cell(Cambridge,Mass.) V. 153 1312 2013.
ISSN: ISSN 0092-8674
PubMed: 23746843
DOI: 10.1016/J.CELL.2013.05.014