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Calcium in PDB 4a41: CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose

Enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose

All present enzymatic activity of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose:
3.2.1.50;

Protein crystallography data

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose, PDB code: 4a41 was solved by E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.23 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.271, 38.322, 53.875, 90.00, 90.64, 90.00
R / Rfree (%) 18.6 / 22.4

Other elements in 4a41:

The structure of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose (pdb code 4a41). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose, PDB code: 4a41:

Calcium binding site 1 out of 1 in 4a41

Go back to Calcium Binding Sites List in 4a41
Calcium binding site 1 out of 1 in the CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CPGH89CBM32-5, From Clostridium Perfringens, in Complex with Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2494

b:10.8
occ:1.00
 O A:PHE1381 2.3 11.0 1.0
O A:LYS1386 2.3 15.7 1.0
OE2 A:GLU1488 2.4 11.1 1.0
OD1 A:ASP1384 2.4 12.6 1.0
O A:ALA1487 2.5 9.8 1.0
O A:THR1389 2.5 11.1 1.0
OG1 A:THR1389 2.5 13.5 1.0
C A:THR1389 3.4 10.8 1.0
CG A:ASP1384 3.4 12.8 1.0
C A:LYS1386 3.4 15.9 1.0
CD A:GLU1488 3.5 10.5 1.0
C A:PHE1381 3.5 9.6 1.0
C A:ALA1487 3.6 10.8 1.0
CB A:THR1389 3.8 11.6 1.0
OD2 A:ASP1384 3.8 14.1 1.0
CA A:THR1389 3.9 11.9 1.0
N A:LYS1386 4.0 14.7 1.0
CG A:GLU1488 4.0 10.7 1.0
N A:THR1389 4.1 12.6 1.0
CA A:LYS1386 4.1 15.2 1.0
CB A:LYS1386 4.2 15.8 1.0
CA A:ALA1487 4.3 10.8 1.0
N A:ILE1390 4.4 9.8 1.0
CA A:ALA1382 4.4 9.9 1.0
CA A:PHE1381 4.4 10.5 1.0
N A:ALA1382 4.4 9.1 1.0
N A:ASP1384 4.5 11.9 1.0
C A:ALA1382 4.5 8.9 1.0
N A:GLU1387 4.5 16.2 1.0
OE1 A:GLU1488 4.5 13.1 1.0
N A:GLU1488 4.6 10.0 1.0
CB A:PHE1381 4.7 10.3 1.0
CB A:ASP1384 4.7 13.0 1.0
CA A:ILE1390 4.8 9.8 1.0
CA A:GLU1387 4.8 15.9 1.0
N A:ILE1383 4.8 10.3 1.0
CG2 A:THR1389 4.8 12.9 1.0
CA A:GLU1488 4.8 9.6 1.0
N A:GLY1385 4.8 13.5 1.0
O A:ALA1382 4.9 10.0 1.0
CB A:ALA1487 4.9 10.4 1.0
CA A:ASP1384 4.9 12.4 1.0
C A:GLU1387 5.0 14.8 1.0

Reference:

E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston. Carbohydrate Recognition By An Architecturally Complex Alpha-N-Acetylglucosaminidase From Clostridium Perfringens. Plos One V. 7 33524 2012.
ISSN: ESSN 1932-6203
PubMed: 22479408
DOI: 10.1371/JOURNAL.PONE.0033524
Page generated: Sat Jul 13 21:53:38 2024

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