Calcium in PDB 4a42: CPGH89CBM32-6 Produced By Clostridium Perfringens

All present enzymatic activity of CPGH89CBM32-6 Produced By Clostridium Perfringens:
3.2.1.50;

The structure of CPGH89CBM32-6 Produced By Clostridium Perfringens, PDB code: 4a42 was solved by E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.234 / 1.55
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	48.810, 48.810, 98.180, 90.00, 90.00, 90.00
R / Rfree (%)	19.66 / 23.87

The binding sites of Calcium atom in the CPGH89CBM32-6 Produced By Clostridium Perfringens (pdb code 4a42). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the CPGH89CBM32-6 Produced By Clostridium Perfringens, PDB code: 4a42:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the CPGH89CBM32-6 Produced By Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of CPGH89CBM32-6 Produced By Clostridium Perfringens within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1690 b:12.3 occ:1.00 O A:ASN1517 2.3 16.4 1.0 O A:ASN1522 2.3 12.7 1.0 O A:GLY1614 2.3 11.6 1.0 OD1 A:ASP1520 2.4 14.6 1.0 OE1 A:GLU1615 2.5 14.9 1.0 OG1 A:THR1525 2.5 15.4 1.0 O A:THR1525 2.6 12.0 1.0 C A:ASN1522 3.4 10.7 1.0 C A:ASN1517 3.4 17.5 1.0 CG A:ASP1520 3.5 17.9 1.0 C A:GLY1614 3.5 9.8 1.0 C A:THR1525 3.6 13.8 1.0 CD A:GLU1615 3.7 14.5 1.0 CB A:THR1525 3.8 15.7 1.0 OD2 A:ASP1520 3.8 19.1 1.0 N A:THR1525 4.0 14.8 1.0 CA A:THR1525 4.0 13.8 1.0 N A:ASN1522 4.0 12.4 1.0 CA A:ASN1517 4.1 19.0 1.0 CA A:ASN1522 4.2 12.7 1.0 CB A:GLU1615 4.4 12.7 1.0 CB A:ASN1517 4.4 19.3 1.0 N A:GLU1523 4.4 11.8 1.0 CA A:GLU1615 4.4 10.8 1.0 CB A:ASN1522 4.4 13.8 1.0 N A:GLU1615 4.4 10.9 1.0 CA A:GLY1614 4.5 10.7 1.0 CA A:GLU1523 4.5 11.3 1.0 N A:LEU1518 4.5 16.2 1.0 N A:ASP1520 4.5 17.5 1.0 OE2 A:GLU1615 4.6 16.0 1.0 C A:GLU1523 4.6 10.6 1.0 CG A:GLU1615 4.7 16.0 1.0 CB A:ASP1520 4.7 18.6 1.0 C A:LEU1518 4.8 16.0 1.0 CA A:LEU1518 4.8 15.4 1.0 N A:LEU1526 4.8 12.6 1.0 N A:GLY1521 4.8 15.8 1.0 CG2 A:THR1525 4.9 18.1 1.0 N A:ASN1524 4.9 11.3 1.0 N A:ARG1519 4.9 17.6 1.0 O A:GLU1523 5.0 11.5 1.0 CA A:ASP1520 5.0 16.5 1.0

Calcium binding site 2 out of 2 in the CPGH89CBM32-6 Produced By Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of CPGH89CBM32-6 Produced By Clostridium Perfringens within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1690 b:21.4 occ:1.00 O B:ASN1522 2.3 23.7 1.0 O B:ASN1517 2.3 21.1 1.0 O B:GLY1614 2.4 22.2 1.0 OG1 B:THR1525 2.4 22.0 1.0 OD1 B:ASP1520 2.5 23.5 1.0 OE1 B:GLU1615 2.5 26.7 1.0 O B:THR1525 2.5 19.8 1.0 CG B:ASP1520 3.4 24.1 1.0 C B:ASN1522 3.4 22.3 1.0 C B:ASN1517 3.5 22.5 1.0 C B:THR1525 3.5 17.4 1.0 C B:GLY1614 3.6 20.2 1.0 CB B:THR1525 3.7 19.3 1.0 CD B:GLU1615 3.8 25.6 1.0 OD2 B:ASP1520 3.8 25.3 1.0 CA B:THR1525 3.9 18.4 1.0 N B:THR1525 3.9 15.6 1.0 N B:ASN1522 4.0 26.7 1.0 CA B:ASN1517 4.1 22.4 1.0 CA B:ASN1522 4.2 24.5 1.0 CB B:GLU1615 4.4 23.8 1.0 CA B:GLU1615 4.4 23.0 1.0 CB B:ASN1517 4.4 21.3 1.0 CB B:ASN1522 4.4 22.8 1.0 N B:GLU1523 4.4 22.0 1.0 N B:GLU1615 4.4 21.8 1.0 CA B:GLY1614 4.5 19.1 1.0 N B:LEU1518 4.5 23.6 1.0 N B:ASP1520 4.5 26.9 1.0 OE2 B:GLU1615 4.6 27.9 1.0 CA B:GLU1523 4.6 19.7 1.0 C B:GLU1523 4.6 18.4 1.0 N B:LEU1526 4.6 17.4 1.0 CG B:GLU1615 4.7 25.7 1.0 CB B:ASP1520 4.7 24.9 1.0 C B:LEU1518 4.7 26.6 1.0 CG2 B:THR1525 4.8 21.1 1.0 CA B:LEU1518 4.8 24.8 1.0 O B:GLU1523 4.9 19.7 1.0 N B:GLY1521 4.9 26.0 1.0 O B:LEU1518 4.9 28.7 1.0 N B:ASN1524 5.0 16.5 1.0

E.Ficko-Blean, C.P.Stuart, M.D.Suits, M.Cid, M.Tessier, R.J.Woods, A.B.Boraston. Carbohydrate Recognition By An Architecturally Complex Alpha-N-Acetylglucosaminidase From Clostridium Perfringens. Plos One V. 7 33524 2012.
ISSN: ISSN 1932-6203
PubMed: 22479408
DOI: 10.1371/JOURNAL.PONE.0033524