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Calcium in PDB 4amc: Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa

Enzymatic activity of Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa

All present enzymatic activity of Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa:
2.4.1.5;

Protein crystallography data

The structure of Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa, PDB code: 4amc was solved by T.Pijning, A.Vujicic-Zagar, S.Kralj, L.Dijkhuizen, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.60
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 183.871, 183.871, 374.004, 90.00, 90.00, 120.00
R / Rfree (%) 23.887 / 25.972

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa (pdb code 4amc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa, PDB code: 4amc:

Calcium binding site 1 out of 1 in 4amc

Go back to Calcium Binding Sites List in 4amc
Calcium binding site 1 out of 1 in the Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Lactobacillus Reuteri 121 N-Terminally Truncated Glucansucrase Gtfa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2764

b:0.3
occ:1.00
 OD1 A:ASP984 2.4 0.8 1.0
O A:ASN1028 2.7 0.8 1.0
O A:GLU978 2.8 0.6 1.0
OD2 A:ASP1513 3.0 0.2 1.0
OE2 A:GLU978 3.0 0.3 1.0
CG A:ASP984 3.3 0.7 1.0
OD2 A:ASP984 3.4 0.9 1.0
C A:ASN1028 3.6 0.8 1.0
CD A:GLU978 3.6 0.6 1.0
CG A:ASP1513 3.6 0.7 1.0
CG2 A:ILE1029 3.8 0.7 1.0
CA A:ILE1029 3.9 0.6 1.0
C A:GLU978 3.9 0.1 1.0
OD1 A:ASP1513 3.9 0.6 1.0
CG A:GLU978 4.0 0.9 1.0
N A:ILE1029 4.1 0.2 1.0
O A:ILE985 4.2 0.1 1.0
O A:ASP1513 4.3 0.4 1.0
CA A:GLU978 4.4 0.1 1.0
CB A:ILE1029 4.4 0.7 1.0
ND2 A:ASN987 4.5 0.1 1.0
OE1 A:GLU978 4.5 0.9 1.0
CB A:ASN1028 4.6 1.0 1.0
CB A:ASP1513 4.7 0.4 1.0
CA A:ASN1028 4.7 0.1 1.0
CA A:ASP1513 4.7 0.7 1.0
CB A:ASP984 4.7 0.6 1.0
CB A:GLU978 4.8 0.8 1.0
C A:ASP1513 4.9 0.4 1.0
N A:PHE979 5.0 0.5 1.0

Reference:

T.Pijning, A.Vujicic-Zagar, S.Kralj, L.Dijkhuizen, B.W.Dijkstra. Structure of the Alpha-1,6/Alpha-1,4-Specific Glucansucrase Gtfa From Lactobacillus Reuteri 121 Acta Crystallogr.,Sect.F V. 68 1448 2012.
ISSN: ISSN 1744-3091
PubMed: 23192022
DOI: 10.1107/S1744309112044168
Page generated: Sat Dec 12 04:39:06 2020

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