Calcium in PDB 4amf: Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
Enzymatic activity of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
All present enzymatic activity of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp:
3.1.3.1;
Protein crystallography data
The structure of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp, PDB code: 4amf
was solved by
S.C.Yong,
P.Roversi,
J.E.D.Lillington,
O.B.Zeldin,
E.F.Garman,
S.M.Lea,
B.C.Berks,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
67.25 /
1.52
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.490,
70.380,
227.870,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.47 /
18.31
|
Other elements in 4amf:
The structure of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
(pdb code 4amf). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp, PDB code: 4amf:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 1 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1592
b:12.1
occ:0.84
|
O
|
A:FEO1595
|
2.2
|
13.2
|
1.0
|
|
OE2
|
A:GLU273
|
2.3
|
13.6
|
1.0
|
|
OD1
|
A:ASP479
|
2.4
|
16.4
|
1.0
|
|
OD2
|
A:ASP479
|
2.4
|
13.0
|
1.0
|
|
O
|
A:HOH2571
|
2.5
|
19.1
|
1.0
|
|
O
|
A:HOH2131
|
2.6
|
14.1
|
1.0
|
|
O
|
A:HOH2132
|
2.7
|
14.9
|
1.0
|
|
CG
|
A:ASP479
|
2.7
|
15.3
|
1.0
|
|
OE2
|
A:GLU387
|
2.9
|
13.8
|
1.0
|
|
HE1
|
A:TRP388
|
3.0
|
12.2
|
1.0
|
|
CD
|
A:GLU273
|
3.4
|
10.5
|
1.0
|
|
O1G
|
A:ACP1589
|
3.5
|
12.2
|
0.8
|
|
FE2
|
A:FEO1595
|
3.6
|
12.8
|
1.0
|
|
FE1
|
A:FEO1595
|
3.6
|
12.3
|
0.9
|
|
HG1
|
A:THR534
|
3.7
|
18.1
|
1.0
|
|
CA
|
A:CA1593
|
3.8
|
13.3
|
1.0
|
|
CD
|
A:GLU387
|
3.8
|
18.4
|
1.0
|
|
OE1
|
A:GLU273
|
3.9
|
13.3
|
1.0
|
|
NE1
|
A:TRP388
|
3.9
|
11.8
|
1.0
|
|
SG
|
A:CYS179
|
3.9
|
15.6
|
1.0
|
|
HB3
|
A:GLU387
|
4.0
|
12.2
|
1.0
|
|
HD1
|
A:TRP388
|
4.0
|
13.8
|
1.0
|
|
CB
|
A:ASP479
|
4.2
|
11.9
|
1.0
|
|
PG
|
A:ACP1589
|
4.3
|
13.1
|
0.8
|
|
OE2
|
A:GLU532
|
4.3
|
16.1
|
1.0
|
|
CD1
|
A:TRP388
|
4.4
|
14.0
|
1.0
|
|
OE1
|
A:GLU387
|
4.4
|
15.8
|
1.0
|
|
O3G
|
A:ACP1589
|
4.4
|
13.0
|
0.8
|
|
O2G
|
A:ACP1589
|
4.6
|
12.7
|
0.8
|
|
HG3
|
A:GLU273
|
4.6
|
11.0
|
1.0
|
|
OD1
|
A:ASP69
|
4.6
|
13.4
|
1.0
|
|
CG
|
A:GLU273
|
4.6
|
10.8
|
1.0
|
|
HB3
|
A:ASP479
|
4.7
|
11.2
|
1.0
|
|
HB2
|
A:ASP479
|
4.7
|
10.1
|
1.0
|
|
OG1
|
A:THR534
|
4.7
|
17.6
|
1.0
|
|
OD2
|
A:ASP69
|
4.7
|
16.3
|
1.0
|
|
O
|
A:HOH2572
|
4.7
|
18.4
|
1.0
|
|
CG
|
A:GLU387
|
4.8
|
11.5
|
1.0
|
|
OD2
|
A:ASP494
|
4.8
|
15.3
|
1.0
|
|
O
|
A:HOH2160
|
4.8
|
17.6
|
1.0
|
|
CB
|
A:GLU387
|
4.9
|
12.1
|
1.0
|
|
HB1
|
A:ALA180
|
4.9
|
11.6
|
1.0
|
|
HG2
|
A:GLU387
|
4.9
|
13.0
|
1.0
|
|
HG2
|
A:GLU273
|
5.0
|
10.2
|
1.0
|
|
Calcium binding site 2 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 2 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1593
b:13.3
occ:0.96
|
O
|
A:HOH2499
|
2.3
|
12.9
|
1.0
|
|
OD2
|
A:ASP479
|
2.4
|
13.0
|
1.0
|
|
OD2
|
A:ASP494
|
2.4
|
15.3
|
1.0
|
|
O1G
|
A:ACP1589
|
2.4
|
12.2
|
0.8
|
|
O1B
|
A:ACP1589
|
2.5
|
14.2
|
0.8
|
|
OE2
|
A:GLU387
|
2.6
|
13.8
|
1.0
|
|
OE1
|
A:GLU387
|
2.7
|
15.8
|
1.0
|
|
CD
|
A:GLU387
|
3.0
|
18.4
|
1.0
|
|
HH22
|
A:ARG385
|
3.1
|
15.2
|
1.0
|
|
HB3
|
A:ASP494
|
3.2
|
15.9
|
1.0
|
|
O3G
|
A:ACP1589
|
3.3
|
13.0
|
0.8
|
|
PG
|
A:ACP1589
|
3.3
|
13.1
|
0.8
|
|
CG
|
A:ASP479
|
3.4
|
15.3
|
1.0
|
|
CG
|
A:ASP494
|
3.4
|
18.2
|
1.0
|
|
HB2
|
A:ASP479
|
3.5
|
10.1
|
1.0
|
|
PB
|
A:ACP1589
|
3.5
|
13.0
|
0.8
|
|
HG23
|
A:THR403
|
3.7
|
13.2
|
1.0
|
|
NH2
|
A:ARG385
|
3.8
|
14.2
|
1.0
|
|
CB
|
A:ASP494
|
3.8
|
15.2
|
1.0
|
|
CA
|
A:CA1592
|
3.8
|
12.1
|
0.8
|
|
CA
|
A:CA1594
|
3.8
|
12.8
|
0.8
|
|
HH21
|
A:ARG385
|
4.0
|
15.2
|
1.0
|
|
O
|
A:FEO1595
|
4.0
|
13.2
|
1.0
|
|
FE2
|
A:FEO1595
|
4.0
|
12.8
|
1.0
|
|
CB
|
A:ASP479
|
4.1
|
11.9
|
1.0
|
|
O2B
|
A:ACP1589
|
4.1
|
12.8
|
0.8
|
|
C3B
|
A:ACP1589
|
4.1
|
11.4
|
0.8
|
|
OD1
|
A:ASP479
|
4.2
|
16.4
|
1.0
|
|
HB2
|
A:ASP494
|
4.2
|
16.1
|
1.0
|
|
HG1
|
A:THR403
|
4.3
|
13.2
|
1.0
|
|
O
|
A:HOH2498
|
4.4
|
18.8
|
1.0
|
|
HH12
|
A:ARG385
|
4.4
|
13.2
|
1.0
|
|
O
|
A:ASP494
|
4.5
|
14.3
|
1.0
|
|
CG
|
A:GLU387
|
4.5
|
11.5
|
1.0
|
|
OD1
|
A:ASP494
|
4.5
|
15.9
|
1.0
|
|
OD2
|
A:ASP292
|
4.6
|
14.7
|
1.0
|
|
OE2
|
A:GLU532
|
4.6
|
16.1
|
1.0
|
|
OG1
|
A:THR403
|
4.6
|
12.8
|
1.0
|
|
HB3
|
A:ASP479
|
4.7
|
11.2
|
1.0
|
|
CG2
|
A:THR403
|
4.7
|
12.6
|
1.0
|
|
CZ
|
A:ARG385
|
4.7
|
21.9
|
1.0
|
|
O
|
A:HOH2571
|
4.8
|
19.1
|
1.0
|
|
O2G
|
A:ACP1589
|
4.8
|
12.7
|
0.8
|
|
O3A
|
A:ACP1589
|
4.8
|
14.6
|
0.8
|
|
H3B1
|
A:ACP1589
|
4.8
|
11.0
|
0.8
|
|
HG3
|
A:GLU387
|
4.9
|
11.8
|
1.0
|
|
HG2
|
A:GLU387
|
4.9
|
13.0
|
1.0
|
|
HB
|
A:THR403
|
4.9
|
16.8
|
1.0
|
|
H3B2
|
A:ACP1589
|
4.9
|
12.3
|
0.8
|
|
NH1
|
A:ARG385
|
5.0
|
13.8
|
1.0
|
|
HG22
|
A:THR403
|
5.0
|
12.9
|
1.0
|
|
HA
|
A:ASP479
|
5.0
|
10.1
|
1.0
|
|
Calcium binding site 3 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 3 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1594
b:12.8
occ:0.78
|
OE1
|
A:GLU532
|
2.3
|
18.3
|
1.0
|
|
O1G
|
A:ACP1589
|
2.3
|
12.2
|
0.8
|
|
OD2
|
A:ASP494
|
2.3
|
15.3
|
1.0
|
|
O
|
A:HOH2160
|
2.4
|
17.6
|
1.0
|
|
O2B
|
A:ACP1589
|
2.5
|
12.8
|
0.8
|
|
O
|
A:HOH2164
|
2.5
|
22.6
|
1.0
|
|
OE2
|
A:GLU532
|
2.8
|
16.1
|
1.0
|
|
CD
|
A:GLU532
|
2.9
|
17.0
|
1.0
|
|
CG
|
A:ASP494
|
3.1
|
18.2
|
1.0
|
|
OD1
|
A:ASP494
|
3.3
|
15.9
|
1.0
|
|
PB
|
A:ACP1589
|
3.4
|
13.0
|
0.8
|
|
PG
|
A:ACP1589
|
3.4
|
13.1
|
0.8
|
|
H3B2
|
A:ACP1589
|
3.5
|
12.3
|
0.8
|
|
C3B
|
A:ACP1589
|
3.6
|
11.4
|
0.8
|
|
HE2
|
A:HIS551
|
3.6
|
14.1
|
1.0
|
|
CA
|
A:CA1593
|
3.8
|
13.3
|
1.0
|
|
O1B
|
A:ACP1589
|
3.9
|
14.2
|
0.8
|
|
O2G
|
A:ACP1589
|
4.0
|
12.7
|
0.8
|
|
O
|
A:HOH2582
|
4.1
|
42.8
|
1.0
|
|
O
|
A:HOH2132
|
4.2
|
14.9
|
1.0
|
|
OE1
|
A:GLN550
|
4.3
|
12.5
|
1.0
|
|
CB
|
A:ASP494
|
4.4
|
15.2
|
1.0
|
|
CG
|
A:GLU532
|
4.4
|
15.2
|
1.0
|
|
HB2
|
A:ASP494
|
4.4
|
16.1
|
1.0
|
|
O
|
A:HOH2614
|
4.5
|
31.9
|
1.0
|
|
NE2
|
A:HIS551
|
4.5
|
13.8
|
1.0
|
|
HE1
|
A:TYR91
|
4.5
|
14.1
|
1.0
|
|
OD2
|
A:ASP479
|
4.6
|
13.0
|
1.0
|
|
HB3
|
A:GLU532
|
4.6
|
14.3
|
1.0
|
|
O
|
A:HOH2305
|
4.7
|
15.5
|
0.5
|
|
H3B1
|
A:ACP1589
|
4.7
|
11.0
|
0.8
|
|
HB3
|
A:ASP494
|
4.7
|
15.9
|
1.0
|
|
O3G
|
A:ACP1589
|
4.7
|
13.0
|
0.8
|
|
HG2
|
A:GLU532
|
4.7
|
15.2
|
1.0
|
|
O
|
A:HOH2571
|
4.8
|
19.1
|
1.0
|
|
O3A
|
A:ACP1589
|
4.8
|
14.6
|
0.8
|
|
OH
|
A:TYR91
|
4.9
|
14.5
|
1.0
|
|
OE1
|
A:GLU90
|
4.9
|
16.8
|
1.0
|
|
O
|
A:HOH2583
|
4.9
|
18.9
|
0.5
|
|
HG3
|
A:GLU532
|
5.0
|
13.6
|
1.0
|
|
CB
|
A:GLU532
|
5.0
|
13.9
|
1.0
|
|
Calcium binding site 4 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 4 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1590
b:14.2
occ:1.00
|
OE2
|
B:GLU273
|
2.3
|
13.2
|
1.0
|
|
O
|
B:FEO1593
|
2.3
|
14.9
|
1.0
|
|
OD1
|
B:ASP479
|
2.4
|
15.1
|
1.0
|
|
O
|
B:HOH2500
|
2.5
|
17.1
|
1.0
|
|
O
|
B:HOH2116
|
2.5
|
15.4
|
1.0
|
|
OD2
|
B:ASP479
|
2.5
|
12.1
|
1.0
|
|
O
|
B:HOH2117
|
2.6
|
15.8
|
1.0
|
|
CG
|
B:ASP479
|
2.8
|
13.4
|
1.0
|
|
HE1
|
B:TRP388
|
2.9
|
11.9
|
1.0
|
|
OE2
|
B:GLU387
|
3.1
|
11.9
|
1.0
|
|
CD
|
B:GLU273
|
3.4
|
10.3
|
1.0
|
|
O1G
|
B:ACP1589
|
3.5
|
12.7
|
0.8
|
|
FE1
|
B:FEO1593
|
3.6
|
11.7
|
0.8
|
|
FE2
|
B:FEO1593
|
3.7
|
12.1
|
1.0
|
|
SG
|
B:CYS179
|
3.8
|
14.7
|
1.0
|
|
NE1
|
B:TRP388
|
3.8
|
13.0
|
1.0
|
|
CA
|
B:CA1591
|
3.9
|
13.8
|
1.0
|
|
HG1
|
B:THR534
|
3.9
|
13.9
|
1.0
|
|
OE1
|
B:GLU273
|
3.9
|
10.6
|
1.0
|
|
CD
|
B:GLU387
|
3.9
|
17.3
|
1.0
|
|
HB3
|
B:GLU387
|
4.0
|
12.1
|
1.0
|
|
HD1
|
B:TRP388
|
4.0
|
14.2
|
1.0
|
|
CB
|
B:ASP479
|
4.3
|
11.1
|
1.0
|
|
CD1
|
B:TRP388
|
4.3
|
14.6
|
1.0
|
|
PG
|
B:ACP1589
|
4.4
|
13.8
|
0.8
|
|
OE2
|
B:GLU532
|
4.4
|
13.9
|
1.0
|
|
OE1
|
B:GLU387
|
4.4
|
14.6
|
1.0
|
|
O3G
|
B:ACP1589
|
4.5
|
13.6
|
0.8
|
|
HG3
|
B:GLU273
|
4.6
|
10.9
|
1.0
|
|
OD1
|
B:ASP69
|
4.6
|
14.8
|
1.0
|
|
OG1
|
B:THR534
|
4.6
|
15.0
|
1.0
|
|
CG
|
B:GLU273
|
4.6
|
11.7
|
1.0
|
|
O2G
|
B:ACP1589
|
4.6
|
14.4
|
0.8
|
|
OD2
|
B:ASP69
|
4.6
|
18.9
|
1.0
|
|
O
|
B:HOH2501
|
4.7
|
19.8
|
1.0
|
|
O
|
B:HOH2139
|
4.8
|
15.3
|
1.0
|
|
HB3
|
B:ASP479
|
4.8
|
8.5
|
1.0
|
|
HB2
|
B:ASP479
|
4.8
|
11.4
|
1.0
|
|
CG
|
B:GLU387
|
4.8
|
15.7
|
1.0
|
|
OD2
|
B:ASP494
|
4.8
|
13.0
|
1.0
|
|
HB1
|
B:ALA180
|
4.8
|
12.9
|
1.0
|
|
CB
|
B:GLU387
|
4.9
|
11.8
|
1.0
|
|
HG2
|
B:GLU273
|
4.9
|
13.2
|
1.0
|
|
HG2
|
B:GLU387
|
5.0
|
16.4
|
1.0
|
|
Calcium binding site 5 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 5 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1591
b:13.8
occ:1.00
|
OD2
|
B:ASP479
|
2.3
|
12.1
|
1.0
|
|
O1G
|
B:ACP1589
|
2.4
|
12.7
|
0.8
|
|
O
|
B:HOH2436
|
2.4
|
14.6
|
1.0
|
|
OD2
|
B:ASP494
|
2.4
|
13.0
|
1.0
|
|
O1B
|
B:ACP1589
|
2.4
|
13.5
|
0.8
|
|
OE2
|
B:GLU387
|
2.5
|
11.9
|
1.0
|
|
OE1
|
B:GLU387
|
2.6
|
14.6
|
1.0
|
|
CD
|
B:GLU387
|
2.9
|
17.3
|
1.0
|
|
HH22
|
B:ARG385
|
3.0
|
18.9
|
1.0
|
|
HB3
|
B:ASP494
|
3.1
|
14.3
|
1.0
|
|
CG
|
B:ASP479
|
3.4
|
13.4
|
1.0
|
|
PG
|
B:ACP1589
|
3.4
|
13.8
|
0.8
|
|
O3G
|
B:ACP1589
|
3.4
|
13.6
|
0.8
|
|
CG
|
B:ASP494
|
3.4
|
16.8
|
1.0
|
|
HB2
|
B:ASP479
|
3.5
|
11.4
|
1.0
|
|
PB
|
B:ACP1589
|
3.5
|
14.3
|
0.8
|
|
NH2
|
B:ARG385
|
3.7
|
16.3
|
1.0
|
|
HG23
|
B:THR403
|
3.8
|
11.1
|
1.0
|
|
CB
|
B:ASP494
|
3.8
|
14.2
|
1.0
|
|
CA
|
B:CA1590
|
3.9
|
14.2
|
1.0
|
|
CA
|
B:CA1592
|
3.9
|
14.3
|
0.9
|
|
HH21
|
B:ARG385
|
3.9
|
16.4
|
1.0
|
|
O
|
B:FEO1593
|
4.0
|
14.9
|
1.0
|
|
FE2
|
B:FEO1593
|
4.0
|
12.1
|
1.0
|
|
O2B
|
B:ACP1589
|
4.0
|
14.9
|
0.8
|
|
CB
|
B:ASP479
|
4.1
|
11.1
|
1.0
|
|
C3B
|
B:ACP1589
|
4.1
|
13.3
|
0.8
|
|
OD1
|
B:ASP479
|
4.2
|
15.1
|
1.0
|
|
HB2
|
B:ASP494
|
4.2
|
11.8
|
1.0
|
|
O
|
B:HOH2435
|
4.3
|
21.5
|
1.0
|
|
CG
|
B:GLU387
|
4.4
|
15.7
|
1.0
|
|
HH12
|
B:ARG385
|
4.4
|
12.3
|
1.0
|
|
O
|
B:ASP494
|
4.5
|
14.7
|
1.0
|
|
HG1
|
B:THR403
|
4.5
|
13.5
|
1.0
|
|
OD2
|
B:ASP292
|
4.5
|
14.5
|
1.0
|
|
OD1
|
B:ASP494
|
4.6
|
16.1
|
1.0
|
|
OG1
|
B:THR403
|
4.6
|
14.3
|
1.0
|
|
OE2
|
B:GLU532
|
4.6
|
13.9
|
1.0
|
|
HB3
|
B:ASP479
|
4.6
|
8.5
|
1.0
|
|
CG2
|
B:THR403
|
4.7
|
13.5
|
1.0
|
|
CZ
|
B:ARG385
|
4.7
|
18.8
|
1.0
|
|
O
|
B:HOH2500
|
4.7
|
17.1
|
1.0
|
|
O2G
|
B:ACP1589
|
4.8
|
14.4
|
0.8
|
|
O3A
|
B:ACP1589
|
4.8
|
15.5
|
0.8
|
|
H3B1
|
B:ACP1589
|
4.8
|
11.2
|
0.8
|
|
HG3
|
B:GLU387
|
4.8
|
16.6
|
1.0
|
|
HB
|
B:THR403
|
4.8
|
13.9
|
1.0
|
|
HG2
|
B:GLU387
|
4.8
|
16.4
|
1.0
|
|
HG22
|
B:THR403
|
4.9
|
10.8
|
1.0
|
|
NH1
|
B:ARG385
|
5.0
|
13.9
|
1.0
|
|
CB
|
B:THR403
|
5.0
|
14.2
|
1.0
|
|
H3B2
|
B:ACP1589
|
5.0
|
12.8
|
0.8
|
|
Calcium binding site 6 out
of 6 in 4amf
Go back to
Calcium Binding Sites List in 4amf
Calcium binding site 6 out
of 6 in the Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Pseudomonas Fluorescens Phox in Complex with the Substrate Analogue Appcp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1592
b:14.3
occ:0.87
|
OD2
|
B:ASP494
|
2.3
|
13.0
|
1.0
|
|
OE1
|
B:GLU532
|
2.3
|
13.9
|
1.0
|
|
O1G
|
B:ACP1589
|
2.4
|
12.7
|
0.8
|
|
O
|
B:HOH2139
|
2.5
|
15.3
|
1.0
|
|
O2B
|
B:ACP1589
|
2.5
|
14.9
|
0.8
|
|
O
|
B:HOH2143
|
2.5
|
22.4
|
1.0
|
|
OE2
|
B:GLU532
|
2.7
|
13.9
|
1.0
|
|
CD
|
B:GLU532
|
2.9
|
15.0
|
1.0
|
|
CG
|
B:ASP494
|
3.1
|
16.8
|
1.0
|
|
OD1
|
B:ASP494
|
3.3
|
16.1
|
1.0
|
|
PB
|
B:ACP1589
|
3.3
|
14.3
|
0.8
|
|
PG
|
B:ACP1589
|
3.4
|
13.8
|
0.8
|
|
H3B2
|
B:ACP1589
|
3.6
|
12.8
|
0.8
|
|
HE2
|
B:HIS551
|
3.6
|
14.1
|
1.0
|
|
C3B
|
B:ACP1589
|
3.6
|
13.3
|
0.8
|
|
CA
|
B:CA1591
|
3.9
|
13.8
|
1.0
|
|
O1B
|
B:ACP1589
|
3.9
|
13.5
|
0.8
|
|
O2G
|
B:ACP1589
|
4.0
|
14.4
|
0.8
|
|
O
|
B:HOH2512
|
4.1
|
32.1
|
1.0
|
|
O
|
B:HOH2117
|
4.2
|
15.8
|
1.0
|
|
OE1
|
B:GLN550
|
4.3
|
13.2
|
1.0
|
|
CG
|
B:GLU532
|
4.4
|
14.2
|
1.0
|
|
O
|
B:HOH2511
|
4.4
|
37.4
|
1.0
|
|
CB
|
B:ASP494
|
4.4
|
14.2
|
1.0
|
|
HE1
|
B:TYR91
|
4.5
|
15.3
|
1.0
|
|
HB2
|
B:ASP494
|
4.5
|
11.8
|
1.0
|
|
O
|
B:HOH2544
|
4.5
|
33.4
|
1.0
|
|
O
|
B:HOH2571
|
4.5
|
28.0
|
1.0
|
|
NE2
|
B:HIS551
|
4.5
|
14.5
|
1.0
|
|
OD2
|
B:ASP479
|
4.5
|
12.1
|
1.0
|
|
HB3
|
B:GLU532
|
4.6
|
9.5
|
1.0
|
|
H3B1
|
B:ACP1589
|
4.7
|
11.2
|
0.8
|
|
HB3
|
B:ASP494
|
4.7
|
14.3
|
1.0
|
|
O3G
|
B:ACP1589
|
4.7
|
13.6
|
0.8
|
|
HG2
|
B:GLU532
|
4.8
|
14.6
|
1.0
|
|
O
|
B:HOH2500
|
4.8
|
17.1
|
1.0
|
|
O3A
|
B:ACP1589
|
4.8
|
15.5
|
0.8
|
|
OH
|
B:TYR91
|
4.8
|
13.3
|
1.0
|
|
OE1
|
B:GLU90
|
4.9
|
13.9
|
1.0
|
|
HG3
|
B:GLU532
|
4.9
|
13.3
|
1.0
|
|
CB
|
B:GLU532
|
5.0
|
11.6
|
1.0
|
|
Reference:
S.C.Yong,
P.Roversi,
J.Lillington,
F.Rodriguez,
M.Krehenbrink,
O.B.Zeldin,
E.F.Garman,
S.M.Lea,
B.C.Berks.
A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry Science V. 345 1170 2014.
ISSN: ISSN 0036-8075
PubMed: 25190793
DOI: 10.1126/SCIENCE.1254237
Page generated: Sat Jul 13 22:05:53 2024
|
