Calcium in PDB 4aqb: Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44

The structure of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44, PDB code: 4aqb was solved by M.O.Skjoedt, P.Roversi, T.Hummelshoj, Y.Palarasah, S.Johnson, S.M.Lea, P.Garred, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.36 / 4.20
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.150, 94.150, 242.570, 90.00, 90.00, 90.00
R / Rfree (%)	27.86 / 30.06

The binding sites of Calcium atom in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 (pdb code 4aqb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44, PDB code: 4aqb:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:56.4 occ:1.00 OD1 A:ASN159 2.1 92.9 1.0 O A:HOH2001 2.3 99.3 1.0 O A:TYR160 2.4 88.4 1.0 O A:VAL140 2.4 92.7 1.0 O A:GLY163 2.6 86.9 1.0 OD1 A:ASP139 2.7 88.3 1.0 OE1 A:GLU142 2.7 89.6 1.0 OD2 A:ASP139 2.8 92.9 1.0 CG A:ASP139 3.1 91.0 1.0 CG A:ASN159 3.1 96.0 1.0 C A:TYR160 3.5 90.0 1.0 C A:GLY163 3.6 85.7 1.0 ND2 A:ASN159 3.6 98.2 1.0 C A:VAL140 3.6 96.1 1.0 CD A:GLU142 3.7 89.6 1.0 N A:GLY163 3.7 85.2 1.0 N A:TYR160 3.7 91.7 1.0 OE2 A:GLU142 3.9 88.5 1.0 CA A:GLY163 4.1 85.0 1.0 N A:GLY162 4.2 85.9 1.0 CA A:TYR160 4.3 92.0 1.0 CA A:ASP141 4.4 0.4 1.0 N A:VAL140 4.4 93.5 1.0 CB A:ASN159 4.4 97.7 1.0 N A:ASP141 4.5 0.6 1.0 N A:GLU142 4.5 97.9 1.0 N A:ILE161 4.5 90.7 1.0 C A:ASN159 4.6 94.6 1.0 CB A:ASP139 4.6 92.1 1.0 C A:GLY162 4.6 85.0 1.0 CA A:ASN159 4.6 94.9 1.0 CA A:VAL140 4.6 96.3 1.0 N A:TYR164 4.7 85.8 1.0 CA A:ILE161 4.7 89.3 1.0 O A:GLY55 4.8 0.1 1.0 C A:ILE161 4.8 87.2 1.0 CA A:GLY162 5.0 85.2 1.0 CB A:TYR164 5.0 88.0 1.0 C A:ASP139 5.0 94.9 1.0

Calcium binding site 2 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca702 b:0.8 occ:1.00 OD1 A:ASP121 2.4 0.4 1.0 OE1 A:GLU68 2.5 0.9 1.0 O A:SER123 2.6 0.2 1.0 O A:HOH2002 2.6 0.8 1.0 OD2 A:ASP76 2.6 1.0 1.0 O A:HOH2003 2.6 0.7 1.0 OE2 A:GLU68 2.7 0.4 1.0 OD1 A:ASP76 2.7 0.7 1.0 CD A:GLU68 2.8 0.9 1.0 CG A:ASP76 2.9 0.2 1.0 CG A:ASP121 3.4 0.0 1.0 C A:SER123 3.6 0.2 1.0 OD2 A:ASP121 3.9 0.9 1.0 CG A:GLU68 4.0 0.8 1.0 CB A:GLU68 4.0 0.8 1.0 CB A:ASP76 4.2 1.0 1.0 CA A:SER123 4.5 1.0 1.0 OD1 A:ASN124 4.5 0.5 1.0 N A:ASN124 4.5 0.9 1.0 N A:ASP121 4.5 0.8 1.0 CA A:ASN124 4.6 0.7 1.0 CB A:TYR75 4.6 0.2 1.0 CB A:SER123 4.7 0.5 1.0 N A:SER123 4.7 1.0 1.0 CB A:ASP121 4.7 0.8 1.0 N A:ASP76 4.7 0.1 1.0 OH A:TYR40 4.9 0.4 1.0 CA A:ASP121 5.0 0.5 1.0

Calcium binding site 3 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca703 b:0.1 occ:1.00 OD1 A:ASP282 2.1 0.8 1.0 OE1 A:GLU235 2.1 0.2 1.0 O A:HOH2004 2.2 57.8 1.0 O A:HOH2005 2.4 43.7 1.0 OD2 A:ASP245 2.4 0.7 1.0 O A:SER284 2.5 0.4 1.0 OD1 A:ASP245 2.5 0.1 1.0 CG A:ASP245 2.8 0.7 1.0 CG A:ASP282 2.8 0.6 1.0 OD2 A:ASP282 3.3 0.3 1.0 CD A:GLU235 3.3 0.8 1.0 C A:SER284 3.7 0.0 1.0 N A:ASP282 3.9 0.8 1.0 CB A:ASP282 4.0 0.4 1.0 CB A:TYR244 4.0 0.6 1.0 CB A:GLU235 4.1 0.3 1.0 OE2 A:GLU235 4.2 0.9 1.0 CB A:ASP245 4.2 0.6 1.0 CA A:ASP282 4.3 0.6 1.0 CG A:GLU235 4.3 0.5 1.0 N A:SER284 4.3 0.3 1.0 C A:ASP282 4.5 0.8 1.0 O A:ASP282 4.5 0.6 1.0 CA A:SER284 4.5 1.0 1.0 N A:ASP245 4.5 0.5 1.0 C A:TYR244 4.6 0.5 1.0 N A:GLY285 4.7 0.4 1.0 CA A:TYR244 4.9 0.3 1.0 O A:TYR244 4.9 0.5 1.0 CA A:GLY285 4.9 0.3 1.0 OH A:TYR206 4.9 0.5 1.0 CA A:ASP245 4.9 0.2 1.0 C A:SER281 5.0 1.0 1.0 CB A:SER284 5.0 0.8 1.0 CG A:TYR244 5.0 0.2 1.0

Calcium binding site 4 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca706 b:1.0 occ:1.00 O A:GLY171 4.7 0.6 1.0

Calcium binding site 5 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca707 b:0.3 occ:1.00 CB A:ALA88 5.0 0.1 1.0

Calcium binding site 6 out of 6 in the Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Mbl-Ficolin Associated Protein-1, Map-1 Aka MAP44 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca708 b:0.9 occ:1.00 OD1 A:ASN287 4.0 0.0 1.0 OE2 A:GLU262 4.6 0.1 1.0 OD1 A:ASP233 4.8 0.9 1.0

M.O.Skjoedt, P.Roversi, T.Hummelshoj, Y.Palarasah, A.Rosbjerg, S.Johnson, S.M.Lea, P.Garred. Crystal Structure and Functional Characterization of the Complement Regulator Mannose-Binding Lectin (Mbl)/Ficolin- Associated Protein-1 (Map-1). J.Biol.Chem. V. 287 32913 2012.
ISSN: ISSN 0021-9258
PubMed: 22854970
DOI: 10.1074/JBC.M112.386680