Atomistry » Calcium » PDB 4aqi-4ayp » 4aqo
Atomistry »
  Calcium »
    PDB 4aqi-4ayp »
      4aqo »

Calcium in PDB 4aqo: Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution.

Enzymatic activity of Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution.

All present enzymatic activity of Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution.:
3.4.24.3;

Protein crystallography data

The structure of Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution., PDB code: 4aqo was solved by U.Eckhard, H.Brandstetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.45 / 0.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 19.753, 70.896, 23.379, 90.00, 95.24, 90.00
R / Rfree (%) 12.386 / 14.998

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution. (pdb code 4aqo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution., PDB code: 4aqo:

Calcium binding site 1 out of 1 in 4aqo

Go back to Calcium Binding Sites List in 4aqo
Calcium binding site 1 out of 1 in the Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Calcium Bound Pkd-Like Domain of Collagenase G From Clostridium Histolyticum at 0.99 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1881

b:5.8
occ:1.00
 OD1 A:ASP825 2.3 7.3 1.0
OD2 A:ASP864 2.4 5.4 1.0
O A:LYS796 2.4 5.8 1.0
OD1 A:ASP823 2.4 8.2 1.0
OD2 A:ASP823 2.4 7.5 1.0
OD1 A:ASN795 2.4 7.5 1.0
O A:HOH2019 2.4 8.5 1.0
CG A:ASP823 2.8 6.7 1.0
CG A:ASP864 3.3 4.9 1.0
CG A:ASN795 3.4 7.3 1.0
CG A:ASP825 3.4 8.1 1.0
C A:LYS796 3.6 5.5 1.0
ND2 A:ASN795 3.6 7.0 1.0
CB A:ASP864 3.8 5.0 1.0
OD2 A:ASP825 3.9 12.1 1.0
N A:LYS796 4.1 6.2 1.0
O A:HOH2018 4.2 12.2 1.0
CB A:ASP823 4.3 7.3 1.0
OD1 A:ASP864 4.3 5.0 1.0
C A:ASP825 4.4 7.1 1.0
N A:GLY826 4.4 7.1 1.0
CA A:LYS796 4.4 6.6 1.0
N A:ALA797 4.5 5.5 1.0
N A:ASP825 4.6 7.0 1.0
C A:ALA797 4.6 5.0 1.0
CA A:ALA797 4.6 5.2 1.0
CB A:ASP825 4.7 7.2 1.0
O A:ASP825 4.7 8.0 1.0
CA A:GLY826 4.7 7.4 1.0
OD1 A:ASP865 4.7 7.0 1.0
N A:PRO798 4.7 5.0 1.0
CB A:ASN795 4.7 9.2 1.0
CA A:ASP825 4.8 7.2 1.0
CD A:PRO798 4.8 5.1 1.0

Reference:

U.Eckhard, E.Schonauer, H.Brandstetter. Structural Basis For Activity Regulation and Substrate Preference of Clostridial Collagenases G, H, and T. J.Biol.Chem. V. 288 20184 2013.
ISSN: ISSN 0021-9258
PubMed: 23703618
DOI: 10.1074/JBC.M112.448548
Page generated: Sat Dec 12 04:39:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy