Calcium in PDB 4avs: Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
Protein crystallography data
The structure of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component, PDB code: 4avs
was solved by
S.Kolstoe,
S.P.Wood,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.479 /
1.40
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.966,
69.937,
102.347,
90.00,
96.97,
90.00
|
|
R / Rfree (%)
|
14.41 /
17.03
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
(pdb code 4avs). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component, PDB code: 4avs:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 1 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca206
b:11.3
occ:1.00
|
OD1
|
A:ASP138
|
2.4
|
14.9
|
1.0
|
|
O
|
A:GLN137
|
2.4
|
11.7
|
1.0
|
|
OD1
|
A:ASN59
|
2.4
|
13.2
|
1.0
|
|
OE2
|
A:GLU136
|
2.4
|
12.5
|
1.0
|
|
OD1
|
A:ASP58
|
2.5
|
14.2
|
1.0
|
|
OXT
|
A:N7P208
|
2.5
|
19.3
|
1.0
|
|
OE1
|
A:GLU136
|
2.6
|
13.2
|
1.0
|
|
OD2
|
A:ASP58
|
2.7
|
14.5
|
1.0
|
|
CD
|
A:GLU136
|
2.9
|
11.8
|
1.0
|
|
CG
|
A:ASP58
|
2.9
|
13.8
|
1.0
|
|
CG
|
A:ASN59
|
3.4
|
12.9
|
1.0
|
|
C
|
A:GLN137
|
3.5
|
11.7
|
1.0
|
|
C
|
A:N7P208
|
3.6
|
22.2
|
1.0
|
|
CG
|
A:ASP138
|
3.6
|
15.1
|
1.0
|
|
ND2
|
A:ASN59
|
3.8
|
14.0
|
1.0
|
|
CA
|
A:ASP138
|
3.8
|
14.8
|
1.0
|
|
CA
|
A:CA207
|
3.9
|
13.0
|
1.0
|
|
O
|
A:N7P208
|
3.9
|
21.7
|
1.0
|
|
N
|
A:ASP138
|
4.0
|
12.7
|
1.0
|
|
O
|
A:HOH2091
|
4.2
|
11.0
|
1.0
|
|
CB
|
A:ASP138
|
4.3
|
14.9
|
1.0
|
|
CG
|
A:GLU136
|
4.4
|
11.5
|
1.0
|
|
N
|
A:ASN59
|
4.4
|
10.8
|
1.0
|
|
CB
|
A:ASP58
|
4.4
|
13.0
|
1.0
|
|
OD2
|
A:ASP138
|
4.5
|
16.9
|
1.0
|
|
CA
|
A:GLN137
|
4.6
|
11.0
|
1.0
|
|
N
|
A:GLN137
|
4.7
|
10.5
|
1.0
|
|
CB
|
A:ASN59
|
4.7
|
11.7
|
1.0
|
|
ND2
|
A:ASN53
|
4.8
|
13.5
|
1.0
|
|
CA
|
A:N7P208
|
4.8
|
26.2
|
1.0
|
|
CA
|
A:ASN59
|
4.9
|
10.8
|
1.0
|
|
Calcium binding site 2 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 2 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca207
b:13.0
occ:1.00
|
O
|
A:N7P208
|
2.3
|
21.7
|
1.0
|
|
OE1
|
A:GLN148
|
2.4
|
14.2
|
1.0
|
|
OE1
|
A:GLU136
|
2.4
|
13.2
|
1.0
|
|
O
|
A:HOH2195
|
2.4
|
14.2
|
1.0
|
|
O
|
A:HOH2196
|
2.5
|
19.3
|
1.0
|
|
OD2
|
A:ASP138
|
2.5
|
16.9
|
1.0
|
|
OD1
|
A:ASP138
|
2.6
|
14.9
|
1.0
|
|
CG
|
A:ASP138
|
2.8
|
15.1
|
1.0
|
|
C
|
A:N7P208
|
3.3
|
22.2
|
1.0
|
|
CD
|
A:GLN148
|
3.4
|
14.7
|
1.0
|
|
CD
|
A:GLU136
|
3.6
|
11.8
|
1.0
|
|
OXT
|
A:N7P208
|
3.6
|
19.3
|
1.0
|
|
NE2
|
A:GLN148
|
3.7
|
17.6
|
1.0
|
|
CA
|
A:CA206
|
3.9
|
11.3
|
1.0
|
|
CB
|
A:ASP138
|
4.3
|
14.9
|
1.0
|
|
CB
|
A:ASP145
|
4.3
|
16.6
|
1.0
|
|
CG
|
A:GLU136
|
4.3
|
11.5
|
1.0
|
|
CB
|
A:GLU136
|
4.4
|
10.4
|
1.0
|
|
O
|
A:GLU136
|
4.4
|
11.0
|
1.0
|
|
OE2
|
A:GLU136
|
4.5
|
12.5
|
1.0
|
|
OD2
|
A:ASP145
|
4.5
|
20.2
|
1.0
|
|
CA
|
A:N7P208
|
4.5
|
26.2
|
1.0
|
|
O
|
A:GLN137
|
4.6
|
11.7
|
1.0
|
|
CG
|
A:GLN148
|
4.7
|
13.0
|
1.0
|
|
O
|
A:LYS143
|
4.8
|
17.6
|
1.0
|
|
C
|
A:GLU136
|
4.8
|
10.0
|
1.0
|
|
C
|
A:GLN137
|
4.8
|
11.7
|
1.0
|
|
N
|
A:ASP138
|
4.8
|
12.7
|
1.0
|
|
CB
|
A:N7P208
|
4.9
|
27.1
|
1.0
|
|
CA
|
A:ASP138
|
4.9
|
14.8
|
1.0
|
|
O
|
A:HOH2197
|
4.9
|
29.4
|
1.0
|
|
CG
|
A:ASP145
|
4.9
|
18.3
|
1.0
|
|
Calcium binding site 3 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 3 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca206
b:7.2
occ:1.00
|
O
|
B:N7P208
|
2.2
|
13.3
|
1.0
|
|
OE1
|
B:GLU136
|
2.4
|
6.1
|
1.0
|
|
O
|
B:HOH2186
|
2.4
|
11.1
|
1.0
|
|
O
|
B:HOH2183
|
2.4
|
7.6
|
1.0
|
|
OE1
|
B:GLN148
|
2.4
|
8.3
|
1.0
|
|
OD2
|
B:ASP138
|
2.5
|
7.5
|
1.0
|
|
OD1
|
B:ASP138
|
2.5
|
6.1
|
1.0
|
|
CG
|
B:ASP138
|
2.8
|
6.4
|
1.0
|
|
C
|
B:N7P208
|
3.3
|
13.5
|
1.0
|
|
CD
|
B:GLN148
|
3.4
|
9.7
|
1.0
|
|
CD
|
B:GLU136
|
3.6
|
6.1
|
1.0
|
|
OXT
|
B:N7P208
|
3.7
|
9.7
|
1.0
|
|
NE2
|
B:GLN148
|
3.8
|
13.6
|
1.0
|
|
CA
|
B:CA207
|
3.9
|
5.5
|
1.0
|
|
CB
|
B:ASP138
|
4.3
|
6.0
|
1.0
|
|
CB
|
B:ASP145
|
4.3
|
8.0
|
1.0
|
|
O
|
B:HOH2248
|
4.3
|
34.2
|
1.0
|
|
CG
|
B:GLU136
|
4.3
|
6.4
|
1.0
|
|
O
|
B:GLU136
|
4.4
|
5.9
|
1.0
|
|
CB
|
B:GLU136
|
4.4
|
5.2
|
1.0
|
|
CA
|
B:N7P208
|
4.4
|
18.1
|
1.0
|
|
OE2
|
B:GLU136
|
4.5
|
7.1
|
1.0
|
|
OD2
|
B:ASP145
|
4.6
|
11.3
|
1.0
|
|
O
|
B:GLN137
|
4.6
|
5.3
|
1.0
|
|
O
|
B:HOH2112
|
4.6
|
37.9
|
1.0
|
|
CB
|
B:N7P208
|
4.7
|
19.6
|
1.0
|
|
CG
|
B:GLN148
|
4.8
|
8.2
|
1.0
|
|
O
|
B:LYS143
|
4.8
|
8.1
|
1.0
|
|
C
|
B:GLN137
|
4.8
|
4.7
|
1.0
|
|
N
|
B:ASP138
|
4.8
|
5.1
|
1.0
|
|
C
|
B:GLU136
|
4.8
|
4.5
|
1.0
|
|
O
|
B:HOH2185
|
4.9
|
23.5
|
1.0
|
|
CA
|
B:ASP138
|
4.9
|
5.9
|
1.0
|
|
CG
|
B:ASP145
|
5.0
|
9.6
|
1.0
|
|
Calcium binding site 4 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 4 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca207
b:5.5
occ:1.00
|
OD1
|
B:ASP138
|
2.4
|
6.1
|
1.0
|
|
O
|
B:GLN137
|
2.4
|
5.3
|
1.0
|
|
OD1
|
B:ASN59
|
2.4
|
6.5
|
1.0
|
|
OD1
|
B:ASP58
|
2.5
|
6.9
|
1.0
|
|
OXT
|
B:N7P208
|
2.5
|
9.7
|
1.0
|
|
OE2
|
B:GLU136
|
2.5
|
7.1
|
1.0
|
|
OE1
|
B:GLU136
|
2.6
|
6.1
|
1.0
|
|
OD2
|
B:ASP58
|
2.7
|
8.9
|
1.0
|
|
CD
|
B:GLU136
|
2.9
|
6.1
|
1.0
|
|
CG
|
B:ASP58
|
2.9
|
7.1
|
1.0
|
|
CG
|
B:ASN59
|
3.4
|
6.2
|
1.0
|
|
C
|
B:GLN137
|
3.5
|
4.7
|
1.0
|
|
C
|
B:N7P208
|
3.5
|
13.5
|
1.0
|
|
CG
|
B:ASP138
|
3.6
|
6.4
|
1.0
|
|
ND2
|
B:ASN59
|
3.8
|
7.7
|
1.0
|
|
O
|
B:N7P208
|
3.8
|
13.3
|
1.0
|
|
CA
|
B:ASP138
|
3.8
|
5.9
|
1.0
|
|
CA
|
B:CA206
|
3.9
|
7.2
|
1.0
|
|
N
|
B:ASP138
|
4.0
|
5.1
|
1.0
|
|
O
|
B:HOH2097
|
4.2
|
7.5
|
1.0
|
|
CB
|
B:ASP138
|
4.3
|
6.0
|
1.0
|
|
CG
|
B:GLU136
|
4.4
|
6.4
|
1.0
|
|
CB
|
B:ASP58
|
4.4
|
7.0
|
1.0
|
|
N
|
B:ASN59
|
4.4
|
6.1
|
1.0
|
|
O
|
B:HOH2112
|
4.4
|
37.9
|
1.0
|
|
OD2
|
B:ASP138
|
4.5
|
7.5
|
1.0
|
|
CA
|
B:GLN137
|
4.7
|
5.1
|
1.0
|
|
N
|
B:GLN137
|
4.7
|
4.7
|
1.0
|
|
CB
|
B:ASN59
|
4.7
|
6.4
|
1.0
|
|
CA
|
B:N7P208
|
4.7
|
18.1
|
1.0
|
|
ND2
|
B:ASN53
|
4.8
|
6.6
|
1.0
|
|
CA
|
B:ASN59
|
4.9
|
5.4
|
1.0
|
|
OD1
|
B:ASN53
|
5.0
|
6.6
|
1.0
|
|
CB
|
B:N7P208
|
5.0
|
19.6
|
1.0
|
|
O
|
B:HOH2183
|
5.0
|
7.6
|
1.0
|
|
Calcium binding site 5 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 5 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca206
b:8.1
occ:1.00
|
OD1
|
C:ASP138
|
2.4
|
9.6
|
1.0
|
|
OD1
|
C:ASN59
|
2.4
|
8.5
|
1.0
|
|
O
|
C:GLN137
|
2.4
|
8.9
|
1.0
|
|
OD1
|
C:ASP58
|
2.4
|
10.3
|
1.0
|
|
OE2
|
C:GLU136
|
2.4
|
8.2
|
1.0
|
|
OXT
|
C:N7P208
|
2.5
|
11.4
|
1.0
|
|
OE1
|
C:GLU136
|
2.6
|
8.8
|
1.0
|
|
OD2
|
C:ASP58
|
2.8
|
12.2
|
1.0
|
|
CD
|
C:GLU136
|
2.9
|
8.6
|
1.0
|
|
CG
|
C:ASP58
|
2.9
|
11.0
|
1.0
|
|
CG
|
C:ASN59
|
3.4
|
8.2
|
1.0
|
|
C
|
C:GLN137
|
3.5
|
8.2
|
1.0
|
|
C
|
C:N7P208
|
3.5
|
13.8
|
1.0
|
|
CG
|
C:ASP138
|
3.6
|
9.7
|
1.0
|
|
ND2
|
C:ASN59
|
3.8
|
9.5
|
1.0
|
|
CA
|
C:ASP138
|
3.8
|
9.4
|
1.0
|
|
CA
|
C:CA207
|
3.9
|
10.2
|
1.0
|
|
O
|
C:N7P208
|
3.9
|
14.7
|
1.0
|
|
N
|
C:ASP138
|
4.1
|
8.1
|
1.0
|
|
O
|
C:HOH2093
|
4.2
|
9.3
|
1.0
|
|
CB
|
C:ASP138
|
4.3
|
9.0
|
1.0
|
|
O
|
C:HOH2107
|
4.4
|
32.0
|
1.0
|
|
CG
|
C:GLU136
|
4.4
|
8.3
|
1.0
|
|
N
|
C:ASN59
|
4.4
|
7.5
|
1.0
|
|
CB
|
C:ASP58
|
4.4
|
10.0
|
1.0
|
|
OD2
|
C:ASP138
|
4.5
|
11.2
|
1.0
|
|
CB
|
C:ASN59
|
4.7
|
8.8
|
1.0
|
|
CA
|
C:GLN137
|
4.7
|
7.3
|
1.0
|
|
CA
|
C:N7P208
|
4.7
|
17.5
|
1.0
|
|
N
|
C:GLN137
|
4.7
|
7.1
|
1.0
|
|
ND2
|
C:ASN53
|
4.7
|
8.4
|
1.0
|
|
CB
|
C:N7P208
|
4.9
|
19.2
|
1.0
|
|
CA
|
C:ASN59
|
4.9
|
8.2
|
1.0
|
|
O
|
C:HOH2188
|
5.0
|
10.3
|
1.0
|
|
Calcium binding site 6 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 6 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca207
b:10.2
occ:1.00
|
O
|
C:N7P208
|
2.3
|
14.7
|
1.0
|
|
O
|
C:HOH2188
|
2.4
|
10.3
|
1.0
|
|
OE1
|
C:GLU136
|
2.4
|
8.8
|
1.0
|
|
OE1
|
C:GLN148
|
2.4
|
10.4
|
1.0
|
|
O
|
C:HOH2192
|
2.4
|
14.0
|
1.0
|
|
OD2
|
C:ASP138
|
2.5
|
11.2
|
1.0
|
|
OD1
|
C:ASP138
|
2.6
|
9.6
|
1.0
|
|
CG
|
C:ASP138
|
2.8
|
9.7
|
1.0
|
|
C
|
C:N7P208
|
3.3
|
13.8
|
1.0
|
|
CD
|
C:GLN148
|
3.4
|
11.7
|
1.0
|
|
CD
|
C:GLU136
|
3.6
|
8.6
|
1.0
|
|
OXT
|
C:N7P208
|
3.7
|
11.4
|
1.0
|
|
NE2
|
C:GLN148
|
3.7
|
15.8
|
1.0
|
|
CA
|
C:CA206
|
3.9
|
8.1
|
1.0
|
|
O
|
C:HOH2189
|
4.2
|
39.6
|
1.0
|
|
CB
|
C:ASP138
|
4.3
|
9.0
|
1.0
|
|
CB
|
C:ASP145
|
4.3
|
13.1
|
1.0
|
|
O
|
C:GLU136
|
4.3
|
7.5
|
1.0
|
|
CG
|
C:GLU136
|
4.3
|
8.3
|
1.0
|
|
CB
|
C:GLU136
|
4.4
|
7.4
|
1.0
|
|
CA
|
C:N7P208
|
4.5
|
17.5
|
1.0
|
|
OD2
|
C:ASP145
|
4.5
|
17.1
|
1.0
|
|
OE2
|
C:GLU136
|
4.5
|
8.2
|
1.0
|
|
O
|
C:GLN137
|
4.6
|
8.9
|
1.0
|
|
O
|
C:HOH2191
|
4.6
|
41.6
|
1.0
|
|
CG
|
C:GLN148
|
4.7
|
10.2
|
1.0
|
|
CB
|
C:N7P208
|
4.8
|
19.2
|
1.0
|
|
C
|
C:GLN137
|
4.8
|
8.2
|
1.0
|
|
O
|
C:LYS143
|
4.8
|
12.8
|
1.0
|
|
C
|
C:GLU136
|
4.8
|
6.8
|
1.0
|
|
N
|
C:ASP138
|
4.8
|
8.1
|
1.0
|
|
O
|
C:HOH2190
|
4.8
|
22.8
|
1.0
|
|
CA
|
C:ASP138
|
4.9
|
9.4
|
1.0
|
|
CG
|
C:ASP145
|
4.9
|
15.6
|
1.0
|
|
Calcium binding site 7 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 7 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca206
b:8.8
occ:1.00
|
O
|
D:N7P208
|
2.3
|
14.3
|
1.0
|
|
OE1
|
D:GLU136
|
2.4
|
7.8
|
1.0
|
|
OE1
|
D:GLN148
|
2.4
|
10.1
|
1.0
|
|
O
|
D:HOH2189
|
2.4
|
8.8
|
1.0
|
|
O
|
D:HOH2190
|
2.4
|
13.4
|
1.0
|
|
OD2
|
D:ASP138
|
2.6
|
10.3
|
1.0
|
|
OD1
|
D:ASP138
|
2.6
|
8.4
|
1.0
|
|
CG
|
D:ASP138
|
2.9
|
8.2
|
1.0
|
|
C
|
D:N7P208
|
3.3
|
15.9
|
1.0
|
|
CD
|
D:GLN148
|
3.4
|
10.2
|
1.0
|
|
CD
|
D:GLU136
|
3.5
|
8.1
|
1.0
|
|
OXT
|
D:N7P208
|
3.7
|
11.3
|
1.0
|
|
NE2
|
D:GLN148
|
3.8
|
14.2
|
1.0
|
|
CA
|
D:CA207
|
3.9
|
6.7
|
1.0
|
|
CG
|
D:GLU136
|
4.3
|
8.1
|
1.0
|
|
O
|
D:HOH2201
|
4.3
|
49.9
|
1.0
|
|
CB
|
D:ASP138
|
4.3
|
7.5
|
1.0
|
|
CB
|
D:ASP145
|
4.3
|
10.9
|
1.0
|
|
CB
|
D:GLU136
|
4.3
|
7.2
|
1.0
|
|
O
|
D:GLU136
|
4.4
|
7.0
|
1.0
|
|
OE2
|
D:GLU136
|
4.5
|
7.7
|
1.0
|
|
CA
|
D:N7P208
|
4.5
|
21.9
|
1.0
|
|
OD2
|
D:ASP145
|
4.6
|
15.1
|
1.0
|
|
O
|
D:GLN137
|
4.6
|
6.9
|
1.0
|
|
O
|
D:HOH2114
|
4.7
|
31.7
|
1.0
|
|
O
|
D:HOH2191
|
4.7
|
32.1
|
1.0
|
|
CG
|
D:GLN148
|
4.7
|
8.5
|
1.0
|
|
C
|
D:GLN137
|
4.8
|
5.9
|
1.0
|
|
CB
|
D:N7P208
|
4.8
|
23.6
|
1.0
|
|
N
|
D:ASP138
|
4.8
|
6.1
|
1.0
|
|
O
|
D:LYS143
|
4.8
|
11.0
|
1.0
|
|
C
|
D:GLU136
|
4.8
|
6.0
|
1.0
|
|
CA
|
D:ASP138
|
4.9
|
7.0
|
1.0
|
|
CG
|
D:ASP145
|
5.0
|
13.2
|
1.0
|
|
Calcium binding site 8 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 8 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca207
b:6.7
occ:1.00
|
OD1
|
D:ASP138
|
2.3
|
8.4
|
1.0
|
|
O
|
D:GLN137
|
2.4
|
6.9
|
1.0
|
|
OD1
|
D:ASN59
|
2.4
|
7.5
|
1.0
|
|
OE2
|
D:GLU136
|
2.5
|
7.7
|
1.0
|
|
OD1
|
D:ASP58
|
2.5
|
7.9
|
1.0
|
|
OXT
|
D:N7P208
|
2.5
|
11.3
|
1.0
|
|
OE1
|
D:GLU136
|
2.6
|
7.8
|
1.0
|
|
OD2
|
D:ASP58
|
2.7
|
9.0
|
1.0
|
|
CD
|
D:GLU136
|
2.9
|
8.1
|
1.0
|
|
CG
|
D:ASP58
|
2.9
|
7.7
|
1.0
|
|
CG
|
D:ASN59
|
3.4
|
7.5
|
1.0
|
|
C
|
D:GLN137
|
3.5
|
5.9
|
1.0
|
|
C
|
D:N7P208
|
3.6
|
15.9
|
1.0
|
|
CG
|
D:ASP138
|
3.6
|
8.2
|
1.0
|
|
ND2
|
D:ASN59
|
3.8
|
8.4
|
1.0
|
|
CA
|
D:ASP138
|
3.9
|
7.0
|
1.0
|
|
CA
|
D:CA206
|
3.9
|
8.8
|
1.0
|
|
O
|
D:N7P208
|
3.9
|
14.3
|
1.0
|
|
N
|
D:ASP138
|
4.0
|
6.1
|
1.0
|
|
O
|
D:HOH2114
|
4.1
|
31.7
|
1.0
|
|
O
|
D:HOH2095
|
4.1
|
7.5
|
1.0
|
|
CB
|
D:ASP138
|
4.3
|
7.5
|
1.0
|
|
CG
|
D:GLU136
|
4.4
|
8.1
|
1.0
|
|
N
|
D:ASN59
|
4.4
|
6.5
|
1.0
|
|
CB
|
D:ASP58
|
4.5
|
8.1
|
1.0
|
|
OD2
|
D:ASP138
|
4.5
|
10.3
|
1.0
|
|
CA
|
D:GLN137
|
4.7
|
6.2
|
1.0
|
|
CB
|
D:ASN59
|
4.7
|
7.0
|
1.0
|
|
N
|
D:GLN137
|
4.7
|
5.8
|
1.0
|
|
ND2
|
D:ASN53
|
4.8
|
7.5
|
1.0
|
|
CA
|
D:N7P208
|
4.8
|
21.9
|
1.0
|
|
CA
|
D:ASN59
|
4.9
|
6.5
|
1.0
|
|
OD1
|
D:ASN53
|
4.9
|
7.5
|
1.0
|
|
Calcium binding site 9 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 9 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca206
b:6.7
occ:1.00
|
OD1
|
E:ASP138
|
2.4
|
8.2
|
1.0
|
|
OD1
|
E:ASN59
|
2.4
|
6.2
|
1.0
|
|
O
|
E:GLN137
|
2.4
|
7.2
|
1.0
|
|
OE2
|
E:GLU136
|
2.5
|
7.3
|
1.0
|
|
OXT
|
E:N7P208
|
2.5
|
11.7
|
1.0
|
|
OD1
|
E:ASP58
|
2.5
|
9.4
|
1.0
|
|
OE1
|
E:GLU136
|
2.6
|
7.0
|
1.0
|
|
OD2
|
E:ASP58
|
2.7
|
12.1
|
1.0
|
|
CD
|
E:GLU136
|
2.9
|
7.0
|
1.0
|
|
CG
|
E:ASP58
|
2.9
|
10.0
|
1.0
|
|
CG
|
E:ASN59
|
3.4
|
6.2
|
1.0
|
|
C
|
E:GLN137
|
3.5
|
6.1
|
1.0
|
|
C
|
E:N7P208
|
3.5
|
16.4
|
1.0
|
|
CG
|
E:ASP138
|
3.6
|
8.3
|
1.0
|
|
ND2
|
E:ASN59
|
3.7
|
8.1
|
1.0
|
|
CA
|
E:ASP138
|
3.8
|
8.7
|
1.0
|
|
CA
|
E:CA207
|
3.9
|
8.0
|
1.0
|
|
O
|
E:N7P208
|
3.9
|
14.3
|
1.0
|
|
N
|
E:ASP138
|
4.0
|
7.2
|
1.0
|
|
O
|
E:HOH2095
|
4.2
|
7.6
|
1.0
|
|
CB
|
E:ASP138
|
4.3
|
8.7
|
1.0
|
|
CG
|
E:GLU136
|
4.4
|
6.6
|
1.0
|
|
CB
|
E:ASP58
|
4.4
|
9.2
|
1.0
|
|
N
|
E:ASN59
|
4.4
|
5.9
|
1.0
|
|
OD2
|
E:ASP138
|
4.5
|
9.9
|
1.0
|
|
CB
|
E:ASN59
|
4.7
|
6.8
|
1.0
|
|
CA
|
E:GLN137
|
4.7
|
6.3
|
1.0
|
|
CA
|
E:N7P208
|
4.7
|
22.9
|
1.0
|
|
N
|
E:GLN137
|
4.7
|
5.8
|
1.0
|
|
O
|
E:HOH2110
|
4.8
|
46.0
|
1.0
|
|
ND2
|
E:ASN53
|
4.8
|
8.6
|
1.0
|
|
CB
|
E:N7P208
|
4.9
|
24.5
|
1.0
|
|
CA
|
E:ASN59
|
4.9
|
6.1
|
1.0
|
|
OD1
|
E:ASN53
|
5.0
|
7.8
|
1.0
|
|
Calcium binding site 10 out
of 10 in 4avs
Go back to
Calcium Binding Sites List in 4avs
Calcium binding site 10 out
of 10 in the Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of N-Acetyl-L-Proline Bound to Serum Amyloid P Component within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca207
b:8.0
occ:1.00
|
O
|
E:N7P208
|
2.3
|
14.3
|
1.0
|
|
OE1
|
E:GLU136
|
2.3
|
7.0
|
1.0
|
|
O
|
E:HOH2183
|
2.4
|
8.5
|
1.0
|
|
OE1
|
E:GLN148
|
2.4
|
8.2
|
1.0
|
|
O
|
E:HOH2185
|
2.4
|
12.9
|
1.0
|
|
OD2
|
E:ASP138
|
2.5
|
9.9
|
1.0
|
|
OD1
|
E:ASP138
|
2.5
|
8.2
|
1.0
|
|
CG
|
E:ASP138
|
2.8
|
8.3
|
1.0
|
|
C
|
E:N7P208
|
3.3
|
16.4
|
1.0
|
|
CD
|
E:GLN148
|
3.5
|
9.2
|
1.0
|
|
CD
|
E:GLU136
|
3.6
|
7.0
|
1.0
|
|
OXT
|
E:N7P208
|
3.6
|
11.7
|
1.0
|
|
NE2
|
E:GLN148
|
3.8
|
13.0
|
1.0
|
|
CA
|
E:CA206
|
3.9
|
6.7
|
1.0
|
|
CB
|
E:ASP138
|
4.3
|
8.7
|
1.0
|
|
CG
|
E:GLU136
|
4.3
|
6.6
|
1.0
|
|
CB
|
E:ASP145
|
4.3
|
9.1
|
1.0
|
|
O
|
E:GLU136
|
4.3
|
7.0
|
1.0
|
|
CB
|
E:GLU136
|
4.4
|
6.0
|
1.0
|
|
O
|
E:HOH2246
|
4.4
|
37.0
|
1.0
|
|
CA
|
E:N7P208
|
4.4
|
22.9
|
1.0
|
|
OE2
|
E:GLU136
|
4.5
|
7.3
|
1.0
|
|
OD2
|
E:ASP145
|
4.5
|
12.6
|
1.0
|
|
O
|
E:GLN137
|
4.6
|
7.2
|
1.0
|
|
O
|
E:HOH2184
|
4.7
|
34.6
|
1.0
|
|
C
|
E:GLN137
|
4.8
|
6.1
|
1.0
|
|
CB
|
E:N7P208
|
4.8
|
24.5
|
1.0
|
|
O
|
E:LYS143
|
4.8
|
9.5
|
1.0
|
|
CG
|
E:GLN148
|
4.8
|
7.7
|
1.0
|
|
N
|
E:ASP138
|
4.8
|
7.2
|
1.0
|
|
O
|
E:HOH2186
|
4.8
|
22.9
|
1.0
|
|
C
|
E:GLU136
|
4.8
|
5.5
|
1.0
|
|
CA
|
E:ASP138
|
4.9
|
8.7
|
1.0
|
|
CG
|
E:ASP145
|
5.0
|
10.7
|
1.0
|
|
Reference:
S.E.Kolstoe,
M.C.Jenvey,
A.Purvis,
M.E.Light,
D.Thompson,
P.Hughes,
M.B.Pepys,
S.P.Wood.
Interaction of Serum Amyloid P Component with Hexanoyl Bis(D-Proline) (Cphpc) Acta Crystallogr.,Sect.D V. 70 2232 2014.
ISSN: ISSN 0907-4449
PubMed: 25084341
DOI: 10.1107/S1399004714013455
Page generated: Sat Jul 13 22:20:29 2024
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