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Calcium in PDB 4ayl: Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen

Enzymatic activity of Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen

All present enzymatic activity of Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen:
2.4.1.40;

Protein crystallography data

The structure of Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen, PDB code: 4ayl was solved by N.Thiyagarajan, T.T.K.Pham, B.Stinson, A.Sundriyal, P.Tumbale, M.Lizotte-Waniewski, K.Brew, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.368 / 1.92
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 41.227, 41.227, 282.944, 90.00, 90.00, 90.00
R / Rfree (%) 17.87 / 22.6

Other elements in 4ayl:

The structure of Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen (pdb code 4ayl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen, PDB code: 4ayl:

Calcium binding site 1 out of 1 in 4ayl

Go back to Calcium Binding Sites List in 4ayl
Calcium binding site 1 out of 1 in the Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Molecular Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo- Blood Group A Antigen within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1235

b:12.5
occ:1.00
 O A:ASN232 2.6 10.6 1.0
OE2 A:GLU216 2.7 19.0 1.0
OD1 A:ASP230 2.7 7.9 1.0
O A:HOH2189 2.8 7.2 1.0
OE1 A:GLU216 2.8 10.7 1.0
O A:HOH2196 2.9 16.9 1.0
CD A:GLU216 3.1 15.4 1.0
CG A:ASP230 3.5 9.0 1.0
C A:ASN232 3.7 20.4 1.0
OD2 A:ASP230 3.9 8.9 1.0
O A:ASP230 4.2 4.1 1.0
O1S A:EPE1236 4.2 18.5 1.0
N A:ASN232 4.3 6.6 1.0
CB A:ASN232 4.3 12.5 1.0
CA A:ASN232 4.3 16.1 1.0
N A:ASP230 4.4 3.5 1.0
C A:ASP230 4.5 8.6 1.0
CG A:GLU216 4.6 4.8 1.0
CD A:PRO234 4.6 19.3 1.0
CB A:ASP230 4.7 3.1 1.0
CA A:ASP230 4.7 5.1 1.0
N A:LYS233 4.8 19.0 1.0
O A:HOH2197 4.8 24.1 1.0
C10 A:EPE1236 4.9 16.6 1.0
CA A:LYS233 5.0 18.7 1.0

Reference:

N.Thiyagarajan, T.T.K.Pham, B.Stinson, A.Sundriyal, P.Tumbale, M.Lizotte-Waniewski, K.Brew, K.R.Acharya. Structure of A Metal-Independent Bacterial Glycosyltransferase That Catalyzes the Synthesis of Histo-Blood Group A Antigen Sci.Rep. V. 2 940 2012.
ISSN: ISSN 2045-2322
PubMed: 23230506
DOI: 10.1038/SREP00940
Page generated: Sat Jul 13 22:26:34 2024

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