Atomistry » Calcium » PDB 4ayq-4bae » 4b5l
Atomistry »
  Calcium »
    PDB 4ayq-4bae »
      4b5l »

Calcium in PDB 4b5l: The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy

Enzymatic activity of The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy

All present enzymatic activity of The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy:
3.4.21.64;

Protein crystallography data

The structure of The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy, PDB code: 4b5l was solved by J.Jakoncic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.98 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.538, 68.538, 108.375, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 18.4

Calcium Binding Sites:

The binding sites of Calcium atom in the The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy (pdb code 4b5l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy, PDB code: 4b5l:

Calcium binding site 1 out of 1 in 4b5l

Go back to Calcium Binding Sites List in 4b5l
Calcium binding site 1 out of 1 in the The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The 1.6 A High Energy Room Temperature Structure of Proteinase K at 38.4 Kev and 0.04 Mgy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1280

b:10.7
occ:1.00
 O A:PRO175 2.4 11.6 1.0
OD2 A:ASP200 2.4 10.5 1.0
O A:VAL177 2.4 10.7 1.0
O A:HOH2089 2.5 14.8 1.0
O A:HOH2087 2.5 10.6 1.0
O A:HOH2091 2.5 13.1 1.0
O A:HOH2090 2.6 16.3 1.0
OD1 A:ASP200 2.7 11.7 1.0
CG A:ASP200 2.9 10.6 1.0
C A:PRO175 3.5 10.6 1.0
C A:VAL177 3.7 10.1 1.0
CA A:PRO175 4.1 11.1 1.0
N A:VAL177 4.1 10.0 1.0
O A:VAL198 4.3 13.4 1.0
CB A:ASP200 4.4 9.8 1.0
C A:SER176 4.5 10.8 1.0
CA A:CYS178 4.5 8.8 1.0
N A:SER176 4.5 10.2 1.0
N A:CYS178 4.5 9.6 1.0
O A:GLU174 4.5 10.3 1.0
N A:THR179 4.6 8.4 1.0
CA A:VAL177 4.6 10.2 1.0
O A:HOH2092 4.7 17.4 1.0
CA A:SER176 4.7 10.7 1.0
OG1 A:THR179 4.8 9.0 1.0
SG A:CYS249 4.9 11.3 1.0

Reference:

J.Jakoncic, V.Stojanoff, V.Honkimaki. High Energy Macromolecular Crystallography Enables Data Collection at Room Temperature To Be Published.
Page generated: Sat Jul 13 22:35:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy