Atomistry » Calcium » PDB 4bb9-4bu4 » 4bow
Atomistry »
  Calcium »
    PDB 4bb9-4bu4 »
      4bow »

Calcium in PDB 4bow: Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose

Enzymatic activity of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose

All present enzymatic activity of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose:
3.2.1.39;

Protein crystallography data

The structure of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose, PDB code: 4bow was solved by A.Labourel, A.Jeudy, M.Czjzek, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.44 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.459, 76.495, 142.941, 90.00, 90.00, 90.00
R / Rfree (%) 13 / 16.666

Other elements in 4bow:

The structure of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose also contains other interesting chemical elements:

Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose (pdb code 4bow). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose, PDB code: 4bow:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4bow

Go back to Calcium Binding Sites List in 4bow
Calcium binding site 1 out of 2 in the Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca400

b:17.8
occ:0.80
 O A:GLY189 2.3 18.6 1.0
O A:GLU145 2.3 17.4 1.0
OD1 A:ASP377 2.4 19.6 1.0
O A:ASP377 2.4 15.0 1.0
O A:HOH2010 2.4 21.9 1.0
OE2 A:GLU147 2.5 27.0 0.5
OE2 A:GLU147 2.6 27.7 0.5
C A:ASP377 3.4 14.9 1.0
C A:GLY189 3.4 20.0 1.0
CG A:ASP377 3.4 19.7 1.0
C A:GLU145 3.5 16.4 1.0
CD A:GLU147 3.7 29.2 0.5
CD A:GLU147 3.8 28.0 0.5
CA A:ASP377 3.9 15.4 1.0
CA A:GLY189 4.1 21.6 1.0
CA A:GLU145 4.2 14.7 1.0
CB A:ASP377 4.3 16.9 1.0
O A:HOH2304 4.3 28.1 1.0
OD2 A:ASP377 4.3 20.2 1.0
CG A:GLU147 4.4 25.1 0.5
CB A:PHE146 4.4 15.6 1.0
CG A:GLU147 4.4 25.5 0.5
N A:THR190 4.5 18.5 1.0
CB A:GLU145 4.5 16.6 1.0
N A:PHE146 4.5 16.9 1.0
N A:TYR378 4.5 14.0 1.0
O A:PHE146 4.6 20.9 1.0
C A:PHE146 4.6 17.1 1.0
OE1 A:GLU147 4.7 27.1 0.5
OE1 A:GLU147 4.7 27.9 0.5
CA A:PHE146 4.7 16.6 1.0
CA A:THR190 4.7 17.4 1.0
OE1 A:GLU145 4.8 19.0 1.0
CB A:TYR378 4.8 14.6 1.0
CG2 A:THR190 4.8 19.2 1.0
CA A:TYR378 4.9 13.7 1.0

Calcium binding site 2 out of 2 in 4bow

Go back to Calcium Binding Sites List in 4bow
Calcium binding site 2 out of 2 in the Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of LAMA_E269S From Z. Galactanivorans in Complex with Laminaritriose and Laminaritetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca400

b:34.6
occ:0.80
 O B:GLY189 2.3 37.8 1.0
O B:GLU145 2.3 36.6 1.0
O B:ASP377 2.3 30.1 1.0
OD1 B:ASP377 2.4 37.2 1.0
O B:HOH2009 2.5 38.2 1.0
OE2 B:GLU147 2.7 59.4 1.0
C B:ASP377 3.3 27.7 1.0
C B:GLU145 3.4 32.2 1.0
C B:GLY189 3.4 38.8 1.0
CG B:ASP377 3.5 30.5 1.0
CD B:GLU147 3.7 58.0 1.0
CA B:ASP377 3.8 26.6 1.0
O B:HOH2216 4.1 52.6 1.0
CA B:GLY189 4.1 38.9 1.0
CA B:GLU145 4.2 35.8 1.0
CB B:ASP377 4.3 31.1 1.0
O B:HOH2217 4.3 45.8 1.0
CG B:GLU147 4.3 48.4 1.0
OD2 B:ASP377 4.4 36.1 1.0
N B:THR190 4.5 35.3 1.0
CB B:PHE146 4.5 33.1 1.0
N B:PHE146 4.5 33.1 1.0
N B:TYR378 4.5 26.9 1.0
CB B:GLU145 4.5 34.5 1.0
O B:PHE146 4.5 36.5 1.0
C B:PHE146 4.5 36.5 1.0
CA B:THR190 4.7 35.2 1.0
OE1 B:GLU147 4.7 54.4 1.0
CA B:PHE146 4.7 33.5 1.0
CB B:TYR378 4.7 29.3 1.0
OE1 B:GLU145 4.8 38.2 1.0
CG2 B:THR190 4.8 40.2 1.0
CA B:TYR378 4.9 26.4 1.0
N B:GLU147 4.9 40.2 1.0

Reference:

A.Labourel, M.Jam, A.Jeudy, J.H.Hehemann, M.Czjzek, G.Michel. The Beta-Glucanase Zglama From Zobellia Galactanivorans Evolved A Bent Active Site Adapted For Efficient Degradation of Algal Laminarin J.Biol.Chem. V. 289 2027 2014.
ISSN: ISSN 0021-9258
PubMed: 24337571
DOI: 10.1074/JBC.M113.538843
Page generated: Sat Jul 13 22:46:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy