Calcium in PDB 4bxs: Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis

The structure of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis, PDB code: 4bxs was solved by B.C.Lechtenberg, T.A.Murray-Rust, D.J.D.Johnson, T.E.Adams, S.Krishnaswamy, R.M.Camire, J.A.Huntington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.81 / 3.32
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	115.310, 115.310, 429.520, 90.00, 90.00, 90.00
R / Rfree (%)	29.773 / 36.793

The structure of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis also contains other interesting chemical elements:

Copper

(Cu)

1 atom

The binding sites of Calcium atom in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis (pdb code 4bxs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis, PDB code: 4bxs:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis within 5.0Å range: probe atom residue distance (Å) B Occ V:Ca2430 b:89.0 occ:1.00 OD1 V:ASP113 2.1 0.7 1.0 O V:GLU109 2.3 0.0 1.0 O V:LYS94 2.3 96.0 1.0 OD1 V:ASP112 2.7 97.2 1.0 CG V:ASP113 3.2 0.5 1.0 C V:LYS94 3.4 86.8 1.0 CG V:ASP112 3.5 0.9 1.0 C V:GLU109 3.5 0.2 1.0 OD2 V:ASP112 3.5 0.8 1.0 OD2 V:ASP113 3.6 1.0 1.0 O V:SER99 3.9 99.9 1.0 CA V:ARG110 4.1 0.4 1.0 OD2 V:ASP103 4.1 95.9 1.0 CA V:LYS94 4.2 95.7 1.0 N V:ARG110 4.2 0.4 1.0 CB V:GLU97 4.3 0.1 1.0 CB V:LYS94 4.4 0.5 1.0 N V:ASP113 4.4 0.6 1.0 N V:TRP95 4.5 90.8 1.0 CB V:ASP113 4.5 0.2 1.0 CA V:GLU109 4.6 0.2 1.0 CG V:LYS94 4.6 0.0 1.0 CA V:TRP95 4.6 0.0 1.0 OE1 V:GLU97 4.7 0.8 1.0 CA V:ASP113 4.7 0.8 1.0 CB V:GLU109 4.8 1.0 1.0 N V:GLY98 4.9 1.0 1.0 CB V:ASP112 4.9 0.5 1.0 CG V:ARG110 4.9 0.2 1.0 N V:GLU97 4.9 0.8 1.0 C V:ARG110 4.9 0.2 1.0 OG1 V:THR105 5.0 0.7 1.0 CB V:ARG110 5.0 0.2 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis within 5.0Å range: probe atom residue distance (Å) B Occ V:Ca2431 b:0.8 occ:1.00 OD1 V:ASP909 2.5 0.9 1.0 O V:LYS890 2.6 0.1 1.0 O V:PHE905 2.6 0.5 1.0 OD1 V:ASP908 2.6 0.5 1.0 O V:HOH2080 3.0 93.8 1.0 OD2 V:ASP908 3.1 0.5 1.0 CG V:ASP908 3.2 0.2 1.0 CG V:ASP909 3.7 0.3 1.0 C V:LYS890 3.7 0.9 1.0 C V:PHE905 3.8 0.3 1.0 OE1 V:GLU893 3.9 0.4 1.0 O V:ARG895 3.9 0.3 1.0 CB V:GLU893 4.1 0.0 1.0 OD2 V:ASP909 4.2 0.9 1.0 CA V:LYS906 4.3 0.2 1.0 OD2 V:ASP899 4.3 0.2 1.0 CA V:LYS890 4.4 0.1 1.0 N V:ASP909 4.5 0.3 1.0 N V:GLY894 4.5 0.3 1.0 N V:LYS906 4.5 0.8 1.0 CD V:GLU893 4.6 0.1 1.0 CB V:ASP908 4.7 0.4 1.0 CG V:GLU893 4.7 0.3 1.0 CB V:LYS890 4.7 0.4 1.0 CA V:ASP909 4.7 0.3 1.0 N V:ARG895 4.8 0.6 1.0 CB V:ASP909 4.8 0.5 1.0 N V:SER891 4.8 0.0 1.0 C V:LYS906 4.9 0.1 1.0 N V:GLU893 4.9 0.3 1.0 O V:LYS906 4.9 0.1 1.0 CA V:PHE905 4.9 0.3 1.0 CB V:PHE905 4.9 0.5 1.0 C V:ARG895 5.0 0.4 1.0 CA V:GLU893 5.0 0.8 1.0 C V:ASP908 5.0 0.3 1.0

B.C.Lechtenberg, T.A.Murray-Rust, D.J.Johnson, T.E.Adams, S.Krishnaswamy, R.M.Camire, J.A.Huntington. Crystal Structure of the Prothrombinase Complex From the Venom of Pseudonaja Textilis. Blood V. 122 2777 2013.
ISSN: ISSN 0006-4971
PubMed: 23869089
DOI: 10.1182/BLOOD-2013-06-511733