Calcium in PDB 4by6: Yeast NOT1-NOT2-NOT5 Complex

The structure of Yeast NOT1-NOT2-NOT5 Complex, PDB code: 4by6 was solved by V.Bhaskar, J.Basquin, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.904 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	110.452, 109.174, 133.622, 90.00, 94.70, 90.00
R / Rfree (%)	18.12 / 22.58

The binding sites of Calcium atom in the Yeast NOT1-NOT2-NOT5 Complex (pdb code 4by6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Yeast NOT1-NOT2-NOT5 Complex, PDB code: 4by6:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Yeast NOT1-NOT2-NOT5 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Yeast NOT1-NOT2-NOT5 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca3080 b:61.0 occ:1.00 O A:ASP1915 2.5 56.3 1.0 OD1 A:ASP1918 2.5 88.3 1.0 OD2 A:ASP1918 2.5 69.6 1.0 OD2 A:ASP1931 2.6 63.9 1.0 CG A:ASP1918 2.9 74.6 1.0 CG A:ASP1931 3.7 55.3 1.0 C A:ASP1915 3.7 50.9 1.0 CB A:ASP1931 4.1 42.5 1.0 CA A:ASP1915 4.4 49.9 1.0 CB A:ASP1918 4.4 63.5 1.0 CB A:ASP1915 4.7 52.0 1.0 N A:THR1916 4.8 37.5 1.0 OD1 A:ASP1931 4.8 57.9 1.0 CA A:THR1916 4.9 41.6 1.0

Calcium binding site 2 out of 2 in the Yeast NOT1-NOT2-NOT5 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Yeast NOT1-NOT2-NOT5 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca3079 b:61.4 occ:1.00 OD2 D:ASP1918 2.5 73.3 1.0 OD2 D:ASP1931 2.5 60.1 1.0 O D:ASP1915 2.6 63.1 1.0 OD1 D:ASP1918 2.6 81.7 1.0 CG D:ASP1918 2.9 71.4 1.0 CG D:ASP1931 3.7 59.5 1.0 C D:ASP1915 3.8 59.5 1.0 CB D:ASP1931 4.1 52.4 1.0 CB D:ASP1918 4.4 68.1 1.0 CA D:ASP1915 4.5 58.5 1.0 OD1 D:ASP1931 4.7 67.5 1.0 N D:THR1916 4.8 50.3 1.0 CB D:ASP1915 4.9 59.5 1.0 CA D:THR1916 5.0 50.1 1.0 CD2 D:LEU1934 5.0 52.1 1.0

V.Bhaskar, V.Roudko, J.Basquin, K.Sharma, H.Urlaub, B.Seraphin, E.Conti. Structure and Rna-Binding Properties of the NOT1-NOT2-NOT5 Module of the Yeast CCR4-Not Complex Nat.Struct.Mol.Biol. V. 20 1281 2013.
ISSN: ISSN 1545-9993
PubMed: 24121231
DOI: 10.1038/NSMB.2686