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Calcium in PDB 4c3v: Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak

Enzymatic activity of Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak

All present enzymatic activity of Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak:
3.4.21.62;

Protein crystallography data

The structure of Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak, PDB code: 4c3v was solved by M.Cianci, J.Negroni, J.R.Helliwell, P.J.Halling, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.76 / 2.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.891, 55.075, 75.311, 90.00, 90.00, 90.00
R / Rfree (%) 15.96 / 22.581

Other elements in 4c3v:

The structure of Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak (pdb code 4c3v). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak, PDB code: 4c3v:

Calcium binding site 1 out of 1 in 4c3v

Go back to Calcium Binding Sites List in 4c3v
Calcium binding site 1 out of 1 in the Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Extensive Counter-Ion Interactions with Subtilisin in Aqueous Medium, No Cs Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1282

b:22.8
occ:0.94
 OD1 A:ASN77 2.3 26.1 1.0
O A:VAL81 2.3 21.7 1.0
OD1 A:ASP41 2.4 21.8 1.0
O A:LEU75 2.4 21.1 1.0
O A:THR79 2.4 28.4 1.0
OE1 A:GLN2 2.5 21.7 1.0
OD2 A:ASP41 2.7 24.4 1.0
CG A:ASP41 2.9 23.4 1.0
CG A:ASN77 3.4 24.2 1.0
CD A:GLN2 3.5 22.1 1.0
C A:VAL81 3.5 21.2 1.0
C A:LEU75 3.6 20.9 1.0
C A:THR79 3.6 24.4 1.0
N A:VAL81 3.7 20.1 1.0
ND2 A:ASN77 3.9 25.4 1.0
N A:ASN77 4.0 23.6 1.0
CG A:GLN2 4.0 21.6 1.0
C A:GLY80 4.2 22.1 1.0
CA A:VAL81 4.3 20.5 1.0
CA A:GLY80 4.3 22.1 1.0
N A:THR79 4.4 28.0 1.0
N A:LEU75 4.4 20.7 1.0
CB A:ASP41 4.4 21.8 1.0
CA A:LEU75 4.4 20.0 1.0
N A:GLY80 4.4 24.8 1.0
CA A:THR79 4.5 25.0 1.0
N A:LEU82 4.6 21.2 1.0
N A:ASP76 4.6 22.4 1.0
CB A:ASN77 4.6 22.6 1.0
CG2 A:THR79 4.6 22.3 1.0
CA A:ASN77 4.6 24.6 1.0
NE2 A:GLN2 4.6 20.7 1.0
CB A:LEU75 4.7 18.2 1.0
C A:ASN77 4.7 27.7 1.0
CB A:GLN2 4.7 22.6 1.0
CA A:ASP76 4.7 24.6 1.0
O A:ASN77 4.7 30.7 1.0
CA A:LEU82 4.7 23.7 1.0
C A:ASP76 4.8 25.6 1.0
C A:ALA74 4.8 19.7 1.0
CB A:ALA74 5.0 19.7 1.0

Reference:

M.Cianci, J.Negroni, J.R.Helliwell, P.J.Halling. Extensive Counter-Ion Interactions Seen at the Surface of Subtilisin in An Aqueous Medium Rsc Adv 2014.
ISSN: ESSN 2046-2069
DOI: 10.1039/C4RA06448H
Page generated: Sat Jul 13 22:59:03 2024

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