Calcium in PDB 4cag: Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
Enzymatic activity of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
All present enzymatic activity of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11:
4.2.2.23;
Protein crystallography data
The structure of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11, PDB code: 4cag
was solved by
H.Otten,
I.I.C.Rodrigues Da Silva,
C.Jers,
C.Nyffenegger,
D.M.Larsen,
J.D.Mikkelsen,
S.Larsen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.731 /
2.50
|
|
Space group
|
P 41 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
95.780,
95.780,
155.650,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.89 /
22.57
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
(pdb code 4cag). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Bacillus Licheniformis Rhamnogalacturonan Lyase PL11, PDB code: 4cag:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 1 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca601
b:0.3
occ:1.00
|
OD1
|
A:ASP371
|
2.0
|
15.1
|
1.0
|
|
OE2
|
A:GLU392
|
2.1
|
26.9
|
1.0
|
|
NE2
|
A:HIS369
|
2.1
|
12.2
|
1.0
|
|
NE2
|
A:HIS333
|
2.1
|
13.9
|
1.0
|
|
O3
|
A:GOL611
|
2.3
|
16.3
|
1.0
|
|
O2
|
A:GOL611
|
2.3
|
19.1
|
1.0
|
|
CG
|
A:ASP371
|
2.8
|
17.9
|
1.0
|
|
CD
|
A:GLU392
|
2.8
|
29.8
|
1.0
|
|
OD2
|
A:ASP371
|
2.9
|
24.2
|
1.0
|
|
CD2
|
A:HIS333
|
3.0
|
13.0
|
1.0
|
|
HD2
|
A:HIS333
|
3.1
|
15.6
|
1.0
|
|
CE1
|
A:HIS369
|
3.1
|
14.6
|
1.0
|
|
CD2
|
A:HIS369
|
3.1
|
17.5
|
1.0
|
|
CE1
|
A:HIS333
|
3.2
|
17.7
|
1.0
|
|
C3
|
A:GOL611
|
3.2
|
24.4
|
1.0
|
|
C2
|
A:GOL611
|
3.2
|
34.5
|
1.0
|
|
HE1
|
A:HIS369
|
3.3
|
17.6
|
1.0
|
|
HD2
|
A:HIS369
|
3.3
|
21.1
|
1.0
|
|
HG3
|
A:GLU392
|
3.4
|
34.3
|
1.0
|
|
OE1
|
A:GLU392
|
3.5
|
32.5
|
1.0
|
|
HE1
|
A:HIS333
|
3.5
|
21.2
|
1.0
|
|
H2
|
A:GOL611
|
3.5
|
41.5
|
1.0
|
|
CG
|
A:GLU392
|
3.7
|
28.6
|
1.0
|
|
H11
|
A:GOL611
|
3.7
|
29.3
|
1.0
|
|
O
|
A:HOH2157
|
4.0
|
27.6
|
1.0
|
|
HG2
|
A:GLU392
|
4.1
|
34.3
|
1.0
|
|
OH
|
A:TYR296
|
4.1
|
20.0
|
1.0
|
|
H12
|
A:GOL611
|
4.1
|
29.3
|
1.0
|
|
CG
|
A:HIS333
|
4.2
|
15.6
|
1.0
|
|
HE1
|
A:TYR296
|
4.2
|
16.4
|
1.0
|
|
ND1
|
A:HIS369
|
4.2
|
14.5
|
1.0
|
|
ND1
|
A:HIS333
|
4.2
|
16.9
|
1.0
|
|
CB
|
A:ASP371
|
4.2
|
13.8
|
1.0
|
|
CG
|
A:HIS369
|
4.2
|
13.9
|
1.0
|
|
HA
|
A:ASP371
|
4.2
|
18.2
|
1.0
|
|
HH
|
A:TYR296
|
4.6
|
24.0
|
1.0
|
|
O
|
A:GLY370
|
4.6
|
14.2
|
1.0
|
|
C1
|
A:GOL611
|
4.6
|
32.0
|
1.0
|
|
CA
|
A:ASP371
|
4.7
|
15.2
|
1.0
|
|
HE2
|
A:TYR565
|
4.7
|
20.3
|
1.0
|
|
HB2
|
A:ASP371
|
4.7
|
16.6
|
1.0
|
|
C
|
A:GLY370
|
4.7
|
15.5
|
1.0
|
|
HB3
|
A:ASP371
|
4.8
|
16.6
|
1.0
|
|
N
|
A:ASP371
|
4.8
|
17.5
|
1.0
|
|
CE1
|
A:TYR296
|
4.9
|
13.7
|
1.0
|
|
CZ
|
A:TYR296
|
4.9
|
12.4
|
1.0
|
|
HD1
|
A:HIS369
|
5.0
|
17.4
|
1.0
|
|
Calcium binding site 2 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 2 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca602
b:11.4
occ:1.00
|
O
|
A:GLY564
|
2.3
|
11.8
|
1.0
|
|
OD1
|
A:ASN566
|
2.3
|
10.1
|
1.0
|
|
O
|
A:ASN562
|
2.4
|
5.8
|
1.0
|
|
O
|
A:HOH2046
|
2.5
|
15.2
|
1.0
|
|
OD2
|
A:ASP123
|
2.5
|
11.4
|
1.0
|
|
O
|
A:HOH2045
|
2.5
|
10.1
|
1.0
|
|
CG
|
A:ASP123
|
3.4
|
10.2
|
1.0
|
|
C
|
A:GLY564
|
3.5
|
9.3
|
1.0
|
|
C
|
A:ASN562
|
3.5
|
8.2
|
1.0
|
|
H
|
A:ASN566
|
3.5
|
9.0
|
1.0
|
|
CG
|
A:ASN566
|
3.5
|
9.1
|
1.0
|
|
O
|
A:HOH2044
|
3.6
|
17.1
|
1.0
|
|
HZ2
|
A:LYS140
|
3.8
|
10.2
|
1.0
|
|
N
|
A:GLY564
|
3.8
|
7.2
|
1.0
|
|
OD1
|
A:ASP123
|
3.8
|
9.8
|
1.0
|
|
HD22
|
A:ASN566
|
3.9
|
5.3
|
1.0
|
|
HA
|
A:ASN562
|
3.9
|
9.0
|
1.0
|
|
H
|
A:GLY564
|
4.0
|
8.6
|
1.0
|
|
O
|
A:HOH2042
|
4.0
|
10.8
|
1.0
|
|
C
|
A:VAL563
|
4.0
|
11.0
|
1.0
|
|
HA
|
A:TYR565
|
4.1
|
14.3
|
1.0
|
|
CA
|
A:GLY564
|
4.1
|
9.8
|
1.0
|
|
ND2
|
A:ASN566
|
4.2
|
4.4
|
1.0
|
|
HB2
|
A:ALA183
|
4.2
|
10.3
|
1.0
|
|
N
|
A:ASN566
|
4.2
|
7.5
|
1.0
|
|
O
|
A:VAL563
|
4.3
|
11.9
|
1.0
|
|
CA
|
A:ASN562
|
4.3
|
7.5
|
1.0
|
|
HA2
|
A:GLY564
|
4.3
|
11.8
|
1.0
|
|
N
|
A:VAL563
|
4.4
|
7.4
|
1.0
|
|
HA
|
A:ALA183
|
4.4
|
13.7
|
1.0
|
|
HZ1
|
A:LYS140
|
4.5
|
10.2
|
1.0
|
|
O
|
A:ALA183
|
4.5
|
11.7
|
1.0
|
|
NZ
|
A:LYS140
|
4.5
|
8.5
|
1.0
|
|
N
|
A:TYR565
|
4.5
|
11.4
|
1.0
|
|
HB2
|
A:ASN562
|
4.5
|
11.0
|
1.0
|
|
HA
|
A:VAL563
|
4.6
|
10.3
|
1.0
|
|
CB
|
A:ASP123
|
4.6
|
12.8
|
1.0
|
|
CA
|
A:VAL563
|
4.6
|
8.6
|
1.0
|
|
O
|
A:HOH2053
|
4.6
|
9.1
|
1.0
|
|
HB3
|
A:ASP123
|
4.6
|
15.3
|
1.0
|
|
CA
|
A:TYR565
|
4.7
|
11.9
|
1.0
|
|
HB2
|
A:ASP123
|
4.7
|
15.3
|
1.0
|
|
CB
|
A:ASN566
|
4.7
|
5.3
|
1.0
|
|
HA
|
A:ASN566
|
4.8
|
12.0
|
1.0
|
|
CA
|
A:ASN566
|
4.8
|
10.0
|
1.0
|
|
HD1
|
A:TYR565
|
4.9
|
17.0
|
1.0
|
|
CB
|
A:ALA183
|
4.9
|
8.6
|
1.0
|
|
C
|
A:TYR565
|
4.9
|
10.2
|
1.0
|
|
O
|
A:GLN561
|
4.9
|
7.7
|
1.0
|
|
HZ3
|
A:LYS140
|
5.0
|
10.2
|
1.0
|
|
Calcium binding site 3 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 3 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca603
b:11.1
occ:1.00
|
OE2
|
A:GLU472
|
2.2
|
9.8
|
1.0
|
|
OD1
|
A:ASP466
|
2.4
|
11.1
|
1.0
|
|
OD1
|
A:ASP468
|
2.4
|
13.8
|
1.0
|
|
O
|
A:GLN470
|
2.5
|
13.7
|
1.0
|
|
O
|
A:HOH2200
|
2.5
|
11.6
|
1.0
|
|
OE1
|
A:GLU472
|
2.5
|
14.8
|
1.0
|
|
O
|
A:ASP468
|
2.5
|
13.7
|
1.0
|
|
CD
|
A:GLU472
|
2.7
|
12.5
|
1.0
|
|
C
|
A:ASP468
|
3.3
|
15.0
|
1.0
|
|
H
|
A:ASP468
|
3.3
|
13.1
|
1.0
|
|
CG
|
A:ASP468
|
3.4
|
12.7
|
1.0
|
|
CG
|
A:ASP466
|
3.4
|
17.5
|
1.0
|
|
C
|
A:GLN470
|
3.5
|
11.3
|
1.0
|
|
H
|
A:ASP466
|
3.7
|
16.5
|
1.0
|
|
N
|
A:ASP468
|
3.7
|
10.9
|
1.0
|
|
HZ3
|
A:LYS481
|
3.8
|
17.2
|
1.0
|
|
CA
|
A:ASP468
|
3.8
|
15.9
|
1.0
|
|
H
|
A:GLN470
|
3.9
|
18.4
|
1.0
|
|
H
|
A:TRP465
|
3.9
|
18.7
|
1.0
|
|
HA
|
A:ARG471
|
3.9
|
19.8
|
1.0
|
|
O
|
A:ASP466
|
3.9
|
15.2
|
1.0
|
|
OD2
|
A:ASP466
|
4.0
|
17.7
|
1.0
|
|
N
|
A:GLN470
|
4.0
|
15.4
|
1.0
|
|
HD1
|
A:TRP464
|
4.1
|
18.6
|
1.0
|
|
C
|
A:ASP466
|
4.1
|
13.6
|
1.0
|
|
HB2
|
A:GLN470
|
4.1
|
16.5
|
1.0
|
|
HZ1
|
A:LYS481
|
4.1
|
17.2
|
1.0
|
|
N
|
A:LEU469
|
4.2
|
10.6
|
1.0
|
|
N
|
A:ASP466
|
4.2
|
13.8
|
1.0
|
|
CB
|
A:ASP468
|
4.2
|
7.4
|
1.0
|
|
OD2
|
A:ASP468
|
4.2
|
14.0
|
1.0
|
|
CA
|
A:GLN470
|
4.2
|
17.6
|
1.0
|
|
CG
|
A:GLU472
|
4.3
|
18.2
|
1.0
|
|
HA
|
A:TRP464
|
4.3
|
15.5
|
1.0
|
|
NZ
|
A:LYS481
|
4.3
|
14.3
|
1.0
|
|
HZ2
|
A:LYS481
|
4.4
|
17.2
|
1.0
|
|
N
|
A:ARG471
|
4.4
|
10.4
|
1.0
|
|
C
|
A:LEU469
|
4.4
|
14.9
|
1.0
|
|
CA
|
A:ASP466
|
4.5
|
12.3
|
1.0
|
|
CB
|
A:ASP466
|
4.5
|
11.2
|
1.0
|
|
CA
|
A:ARG471
|
4.5
|
16.5
|
1.0
|
|
HA
|
A:LEU469
|
4.5
|
17.0
|
1.0
|
|
HG3
|
A:GLU472
|
4.6
|
21.8
|
1.0
|
|
HG2
|
A:GLU472
|
4.6
|
21.8
|
1.0
|
|
CB
|
A:GLN470
|
4.6
|
13.8
|
1.0
|
|
N
|
A:TRP465
|
4.6
|
15.6
|
1.0
|
|
H
|
A:GLU472
|
4.6
|
12.9
|
1.0
|
|
CA
|
A:LEU469
|
4.7
|
14.2
|
1.0
|
|
N
|
A:GLY467
|
4.7
|
15.5
|
1.0
|
|
C
|
A:GLY467
|
4.7
|
14.2
|
1.0
|
|
HA
|
A:ASP468
|
4.7
|
19.0
|
1.0
|
|
HB3
|
A:ASP468
|
4.8
|
8.9
|
1.0
|
|
H
|
A:LEU469
|
4.8
|
12.7
|
1.0
|
|
C
|
A:ARG471
|
4.8
|
18.4
|
1.0
|
|
N
|
A:GLU472
|
4.8
|
10.8
|
1.0
|
|
HB3
|
A:GLN470
|
4.8
|
16.5
|
1.0
|
|
HH2
|
A:TRP518
|
4.8
|
17.4
|
1.0
|
|
HB2
|
A:ASP468
|
4.9
|
8.9
|
1.0
|
|
Calcium binding site 4 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 4 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca604
b:17.2
occ:1.00
|
OE2
|
A:GLU436
|
2.3
|
14.5
|
1.0
|
|
O
|
A:ASP429
|
2.3
|
19.1
|
1.0
|
|
O
|
A:HOH2178
|
2.3
|
14.8
|
1.0
|
|
O
|
A:TYR432
|
2.4
|
24.0
|
1.0
|
|
OE1
|
A:GLU436
|
2.4
|
15.4
|
1.0
|
|
O
|
A:GLY434
|
2.4
|
20.0
|
1.0
|
|
OD1
|
A:ASP427
|
2.4
|
15.8
|
1.0
|
|
CD
|
A:GLU436
|
2.7
|
13.3
|
1.0
|
|
H
|
A:ASP429
|
3.3
|
25.6
|
1.0
|
|
HA
|
A:ASP427
|
3.3
|
18.2
|
1.0
|
|
CG
|
A:ASP427
|
3.3
|
16.1
|
1.0
|
|
C
|
A:ASP429
|
3.4
|
16.0
|
1.0
|
|
C
|
A:GLY434
|
3.6
|
24.0
|
1.0
|
|
C
|
A:TYR432
|
3.6
|
18.2
|
1.0
|
|
HB2
|
A:TYR432
|
3.7
|
18.1
|
1.0
|
|
HB3
|
A:ASP429
|
3.7
|
18.0
|
1.0
|
|
H
|
A:TYR432
|
3.7
|
21.9
|
1.0
|
|
H
|
A:GLY434
|
3.9
|
29.8
|
1.0
|
|
N
|
A:ASP429
|
4.0
|
21.3
|
1.0
|
|
H
|
A:GLU436
|
4.0
|
15.9
|
1.0
|
|
HA
|
A:PRO430
|
4.0
|
19.3
|
1.0
|
|
HA
|
A:ALA435
|
4.0
|
23.1
|
1.0
|
|
N
|
A:GLY434
|
4.1
|
24.9
|
1.0
|
|
CA
|
A:ASP427
|
4.1
|
15.2
|
1.0
|
|
CB
|
A:ASP427
|
4.1
|
12.8
|
1.0
|
|
HB2
|
A:ASP427
|
4.1
|
15.3
|
1.0
|
|
CA
|
A:ASP429
|
4.1
|
15.2
|
1.0
|
|
OD2
|
A:ASP427
|
4.1
|
17.0
|
1.0
|
|
H
|
A:ILE428
|
4.1
|
23.2
|
1.0
|
|
CG
|
A:GLU436
|
4.2
|
20.1
|
1.0
|
|
O
|
A:HOH2185
|
4.2
|
16.1
|
1.0
|
|
HA
|
A:GLU433
|
4.3
|
36.0
|
1.0
|
|
N
|
A:GLU436
|
4.3
|
13.3
|
1.0
|
|
CA
|
A:TYR432
|
4.4
|
19.0
|
1.0
|
|
CB
|
A:ASP429
|
4.4
|
15.0
|
1.0
|
|
N
|
A:PRO430
|
4.4
|
16.7
|
1.0
|
|
N
|
A:TYR432
|
4.4
|
18.2
|
1.0
|
|
C
|
A:GLU433
|
4.4
|
25.7
|
1.0
|
|
CB
|
A:TYR432
|
4.5
|
15.1
|
1.0
|
|
CA
|
A:GLY434
|
4.5
|
24.1
|
1.0
|
|
N
|
A:ALA435
|
4.5
|
20.0
|
1.0
|
|
N
|
A:ILE428
|
4.5
|
19.4
|
1.0
|
|
CA
|
A:ALA435
|
4.5
|
19.2
|
1.0
|
|
HG3
|
A:GLU436
|
4.5
|
24.1
|
1.0
|
|
CA
|
A:PRO430
|
4.6
|
16.1
|
1.0
|
|
N
|
A:GLU433
|
4.6
|
25.2
|
1.0
|
|
C
|
A:ALA435
|
4.6
|
21.3
|
1.0
|
|
HG2
|
A:GLU436
|
4.6
|
24.1
|
1.0
|
|
O
|
A:HOH2180
|
4.6
|
20.9
|
1.0
|
|
C
|
A:ASP427
|
4.6
|
20.5
|
1.0
|
|
CA
|
A:GLU433
|
4.7
|
30.1
|
1.0
|
|
HB2
|
A:ASP429
|
4.9
|
18.0
|
1.0
|
|
HB3
|
A:TYR432
|
4.9
|
18.1
|
1.0
|
|
O
|
A:GLU433
|
5.0
|
28.9
|
1.0
|
|
C
|
A:PRO430
|
5.0
|
20.2
|
1.0
|
|
HA3
|
A:GLY434
|
5.0
|
28.9
|
1.0
|
|
HB3
|
A:ASP427
|
5.0
|
15.3
|
1.0
|
|
Calcium binding site 5 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 5 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca605
b:14.9
occ:1.00
|
OE2
|
A:GLU200
|
2.1
|
14.7
|
1.0
|
|
O
|
A:LYS198
|
2.2
|
17.7
|
1.0
|
|
OD1
|
A:ASP194
|
2.4
|
27.4
|
1.0
|
|
OD1
|
A:ASP196
|
2.4
|
17.6
|
1.0
|
|
OD1
|
A:ASP192
|
2.4
|
15.1
|
1.0
|
|
OE1
|
A:GLU200
|
2.6
|
15.1
|
1.0
|
|
CD
|
A:GLU200
|
2.6
|
13.2
|
1.0
|
|
H
|
A:ASP196
|
3.1
|
22.6
|
1.0
|
|
CG
|
A:ASP196
|
3.1
|
19.1
|
1.0
|
|
CG
|
A:ASP194
|
3.1
|
17.0
|
1.0
|
|
HA
|
A:ASP192
|
3.2
|
22.1
|
1.0
|
|
H
|
A:ASP194
|
3.3
|
23.8
|
1.0
|
|
CG
|
A:ASP192
|
3.4
|
16.6
|
1.0
|
|
C
|
A:LYS198
|
3.4
|
18.3
|
1.0
|
|
OD2
|
A:ASP194
|
3.4
|
29.2
|
1.0
|
|
H
|
A:LYS198
|
3.4
|
20.9
|
1.0
|
|
OD2
|
A:ASP196
|
3.6
|
24.1
|
1.0
|
|
H
|
A:GLY195
|
3.7
|
25.7
|
1.0
|
|
N
|
A:ASP196
|
3.8
|
18.8
|
1.0
|
|
CA
|
A:ASP192
|
3.9
|
18.4
|
1.0
|
|
H
|
A:PHE193
|
4.0
|
16.6
|
1.0
|
|
HB2
|
A:LYS198
|
4.0
|
29.1
|
1.0
|
|
HA
|
A:ALA199
|
4.0
|
19.5
|
1.0
|
|
N
|
A:LYS198
|
4.0
|
17.4
|
1.0
|
|
CB
|
A:ASP192
|
4.0
|
13.2
|
1.0
|
|
CB
|
A:ASP196
|
4.1
|
11.5
|
1.0
|
|
N
|
A:ASP194
|
4.1
|
19.8
|
1.0
|
|
HB3
|
A:ASP196
|
4.1
|
13.8
|
1.0
|
|
HB2
|
A:ASP192
|
4.1
|
15.8
|
1.0
|
|
CG
|
A:GLU200
|
4.2
|
15.8
|
1.0
|
|
CA
|
A:LYS198
|
4.2
|
18.5
|
1.0
|
|
N
|
A:PHE193
|
4.2
|
13.9
|
1.0
|
|
C
|
A:ASP192
|
4.2
|
15.2
|
1.0
|
|
H
|
A:GLY197
|
4.2
|
20.2
|
1.0
|
|
N
|
A:GLY195
|
4.3
|
21.4
|
1.0
|
|
OD2
|
A:ASP192
|
4.3
|
16.6
|
1.0
|
|
N
|
A:ALA199
|
4.4
|
15.7
|
1.0
|
|
CA
|
A:ASP196
|
4.4
|
16.4
|
1.0
|
|
O
|
A:HOH2090
|
4.4
|
22.7
|
1.0
|
|
CB
|
A:ASP194
|
4.4
|
19.6
|
1.0
|
|
HG3
|
A:GLU200
|
4.4
|
18.9
|
1.0
|
|
H
|
A:GLU200
|
4.5
|
14.2
|
1.0
|
|
CA
|
A:ALA199
|
4.5
|
16.2
|
1.0
|
|
N
|
A:GLY197
|
4.5
|
16.9
|
1.0
|
|
HG2
|
A:GLU200
|
4.5
|
18.9
|
1.0
|
|
CA
|
A:ASP194
|
4.6
|
19.2
|
1.0
|
|
CB
|
A:LYS198
|
4.6
|
24.2
|
1.0
|
|
C
|
A:ALA199
|
4.6
|
15.2
|
1.0
|
|
N
|
A:GLU200
|
4.7
|
11.8
|
1.0
|
|
C
|
A:ASP196
|
4.7
|
17.0
|
1.0
|
|
C
|
A:ASP194
|
4.8
|
14.2
|
1.0
|
|
HB3
|
A:ASP194
|
4.8
|
23.5
|
1.0
|
|
C
|
A:GLY195
|
4.8
|
16.0
|
1.0
|
|
HB2
|
A:ASP196
|
4.9
|
13.8
|
1.0
|
|
HB3
|
A:ASP192
|
5.0
|
15.8
|
1.0
|
|
HE2
|
A:PHE306
|
5.0
|
16.4
|
1.0
|
|
Calcium binding site 6 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 6 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca606
b:23.9
occ:1.00
|
OD2
|
A:ASP343
|
2.3
|
21.6
|
1.0
|
|
OD1
|
A:ASP356
|
2.4
|
30.0
|
1.0
|
|
OD2
|
A:ASP341
|
2.5
|
17.0
|
1.0
|
|
ND1
|
A:HIS357
|
2.6
|
24.3
|
1.0
|
|
OE2
|
A:GLU347
|
2.6
|
15.1
|
1.0
|
|
CG
|
A:ASP356
|
3.1
|
28.7
|
1.0
|
|
HE1
|
A:HIS357
|
3.1
|
23.5
|
1.0
|
|
OD2
|
A:ASP356
|
3.1
|
43.0
|
1.0
|
|
CE1
|
A:HIS357
|
3.2
|
19.6
|
1.0
|
|
CG
|
A:ASP343
|
3.3
|
26.0
|
1.0
|
|
CG
|
A:ASP341
|
3.3
|
17.9
|
1.0
|
|
H
|
A:HIS357
|
3.4
|
24.1
|
1.0
|
|
OD1
|
A:ASP341
|
3.4
|
22.1
|
1.0
|
|
CD
|
A:GLU347
|
3.5
|
22.2
|
1.0
|
|
OD1
|
A:ASP343
|
3.5
|
25.6
|
1.0
|
|
HG3
|
A:GLU347
|
3.6
|
23.4
|
1.0
|
|
CA
|
A:CA607
|
3.8
|
29.1
|
1.0
|
|
CG
|
A:HIS357
|
3.8
|
32.9
|
1.0
|
|
HB3
|
A:HIS357
|
3.8
|
22.5
|
1.0
|
|
CG
|
A:GLU347
|
4.0
|
19.5
|
1.0
|
|
HB2
|
A:LYS345
|
4.1
|
25.1
|
1.0
|
|
HG2
|
A:GLU347
|
4.1
|
23.4
|
1.0
|
|
O
|
A:HOH2149
|
4.1
|
17.4
|
1.0
|
|
N
|
A:HIS357
|
4.2
|
20.1
|
1.0
|
|
CB
|
A:HIS357
|
4.3
|
18.8
|
1.0
|
|
OE1
|
A:GLU347
|
4.4
|
19.5
|
1.0
|
|
NE2
|
A:HIS357
|
4.4
|
21.8
|
1.0
|
|
HA
|
A:ASP356
|
4.5
|
27.9
|
1.0
|
|
CB
|
A:ASP356
|
4.5
|
22.6
|
1.0
|
|
CB
|
A:ASP343
|
4.6
|
18.7
|
1.0
|
|
HB3
|
A:ASP343
|
4.6
|
22.4
|
1.0
|
|
CD2
|
A:HIS357
|
4.7
|
22.5
|
1.0
|
|
CB
|
A:ASP341
|
4.8
|
25.2
|
1.0
|
|
HD2
|
A:LYS345
|
4.8
|
30.2
|
1.0
|
|
CA
|
A:ASP356
|
4.9
|
23.2
|
1.0
|
|
CA
|
A:HIS357
|
5.0
|
14.7
|
1.0
|
|
O
|
A:LYS345
|
5.0
|
21.4
|
1.0
|
|
HD11
|
A:LEU362
|
5.0
|
30.3
|
1.0
|
|
HB3
|
A:ASP356
|
5.0
|
27.2
|
1.0
|
|
HB3
|
A:ASP341
|
5.0
|
30.2
|
1.0
|
|
Calcium binding site 7 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 7 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca607
b:29.1
occ:1.00
|
OD1
|
A:ASP343
|
2.3
|
25.6
|
1.0
|
|
OE2
|
A:GLU347
|
2.3
|
15.1
|
1.0
|
|
O
|
A:LYS345
|
2.3
|
21.4
|
1.0
|
|
OD1
|
A:ASP341
|
2.3
|
22.1
|
1.0
|
|
OD1
|
A:ASP339
|
2.5
|
20.5
|
1.0
|
|
OE1
|
A:GLU347
|
2.7
|
19.5
|
1.0
|
|
CD
|
A:GLU347
|
2.8
|
22.2
|
1.0
|
|
HA
|
A:ASP339
|
3.0
|
23.9
|
1.0
|
|
H
|
A:LYS345
|
3.0
|
23.0
|
1.0
|
|
CG
|
A:ASP343
|
3.1
|
26.0
|
1.0
|
|
H
|
A:ASP343
|
3.1
|
26.4
|
1.0
|
|
H
|
A:ASP341
|
3.2
|
24.5
|
1.0
|
|
CG
|
A:ASP339
|
3.2
|
15.2
|
1.0
|
|
C
|
A:LYS345
|
3.3
|
14.5
|
1.0
|
|
CG
|
A:ASP341
|
3.4
|
17.9
|
1.0
|
|
N
|
A:LYS345
|
3.6
|
19.1
|
1.0
|
|
HB2
|
A:LYS345
|
3.6
|
25.1
|
1.0
|
|
CA
|
A:ASP339
|
3.7
|
19.9
|
1.0
|
|
HB2
|
A:ASP339
|
3.7
|
14.5
|
1.0
|
|
OD2
|
A:ASP343
|
3.7
|
21.6
|
1.0
|
|
H
|
A:VAL340
|
3.7
|
16.8
|
1.0
|
|
CB
|
A:ASP339
|
3.7
|
12.1
|
1.0
|
|
N
|
A:ASP343
|
3.8
|
22.0
|
1.0
|
|
CA
|
A:CA606
|
3.8
|
23.9
|
1.0
|
|
H
|
A:GLY344
|
3.8
|
21.1
|
1.0
|
|
H
|
A:GLY342
|
3.9
|
36.1
|
1.0
|
|
CA
|
A:LYS345
|
3.9
|
20.2
|
1.0
|
|
OD2
|
A:ASP341
|
3.9
|
17.0
|
1.0
|
|
OD2
|
A:ASP339
|
4.0
|
17.6
|
1.0
|
|
N
|
A:ASP341
|
4.0
|
20.4
|
1.0
|
|
N
|
A:VAL340
|
4.1
|
14.0
|
1.0
|
|
N
|
A:GLY344
|
4.1
|
17.6
|
1.0
|
|
C
|
A:ASP339
|
4.1
|
17.8
|
1.0
|
|
CB
|
A:ASP343
|
4.2
|
18.7
|
1.0
|
|
CA
|
A:ASP343
|
4.2
|
15.6
|
1.0
|
|
CB
|
A:LYS345
|
4.2
|
20.9
|
1.0
|
|
N
|
A:GLY342
|
4.2
|
30.1
|
1.0
|
|
C
|
A:ASP343
|
4.3
|
19.8
|
1.0
|
|
CG
|
A:GLU347
|
4.4
|
19.5
|
1.0
|
|
HA
|
A:ASP346
|
4.4
|
17.9
|
1.0
|
|
N
|
A:ASP346
|
4.4
|
15.4
|
1.0
|
|
CB
|
A:ASP341
|
4.5
|
25.2
|
1.0
|
|
CA
|
A:ASP341
|
4.5
|
26.8
|
1.0
|
|
C
|
A:GLY344
|
4.5
|
21.3
|
1.0
|
|
C
|
A:ASP341
|
4.6
|
27.1
|
1.0
|
|
HB3
|
A:ASP343
|
4.6
|
22.4
|
1.0
|
|
HG3
|
A:GLU347
|
4.6
|
23.4
|
1.0
|
|
HB3
|
A:ASP339
|
4.6
|
14.5
|
1.0
|
|
H
|
A:GLU347
|
4.6
|
16.6
|
1.0
|
|
C
|
A:GLY342
|
4.7
|
19.2
|
1.0
|
|
HG2
|
A:GLU347
|
4.7
|
23.4
|
1.0
|
|
HB3
|
A:LYS345
|
4.8
|
25.1
|
1.0
|
|
HA
|
A:LYS345
|
4.8
|
24.2
|
1.0
|
|
CA
|
A:ASP346
|
4.8
|
14.9
|
1.0
|
|
CA
|
A:GLY344
|
4.9
|
13.9
|
1.0
|
|
N
|
A:GLU347
|
4.9
|
13.8
|
1.0
|
|
HB3
|
A:HIS357
|
4.9
|
22.5
|
1.0
|
|
HG23
|
A:VAL340
|
4.9
|
21.4
|
1.0
|
|
N
|
A:ASP339
|
4.9
|
16.5
|
1.0
|
|
C
|
A:ASP346
|
4.9
|
17.5
|
1.0
|
|
HB2
|
A:ASP343
|
4.9
|
22.4
|
1.0
|
|
CA
|
A:GLY342
|
5.0
|
22.8
|
1.0
|
|
Calcium binding site 8 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 8 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca608
b:46.9
occ:1.00
|
OD1
|
A:ASN377
|
2.3
|
14.1
|
1.0
|
|
O
|
A:GLY384
|
2.4
|
19.6
|
1.0
|
|
O
|
A:ARG382
|
2.5
|
33.1
|
1.0
|
|
O
|
A:ASP379
|
2.5
|
15.3
|
1.0
|
|
OE2
|
A:GLU386
|
2.5
|
25.0
|
1.0
|
|
OE1
|
A:GLU386
|
2.9
|
21.6
|
1.0
|
|
HB2
|
A:ARG382
|
3.0
|
27.1
|
1.0
|
|
CD
|
A:GLU386
|
3.1
|
21.4
|
1.0
|
|
CG
|
A:ASN377
|
3.1
|
12.4
|
1.0
|
|
HA
|
A:ASN377
|
3.4
|
21.8
|
1.0
|
|
C
|
A:ASP379
|
3.4
|
18.3
|
1.0
|
|
C
|
A:ARG382
|
3.5
|
22.2
|
1.0
|
|
HA
|
A:PRO380
|
3.6
|
21.9
|
1.0
|
|
H
|
A:ASP379
|
3.6
|
21.9
|
1.0
|
|
C
|
A:GLY384
|
3.6
|
24.3
|
1.0
|
|
HD22
|
A:ASN377
|
3.7
|
23.4
|
1.0
|
|
CB
|
A:ARG382
|
3.8
|
22.6
|
1.0
|
|
ND2
|
A:ASN377
|
3.8
|
19.5
|
1.0
|
|
H
|
A:ARG382
|
3.8
|
31.5
|
1.0
|
|
HA
|
A:LEU385
|
3.8
|
23.3
|
1.0
|
|
HB3
|
A:ARG382
|
3.9
|
27.1
|
1.0
|
|
HB3
|
A:ASP379
|
3.9
|
23.2
|
1.0
|
|
CA
|
A:ARG382
|
4.0
|
25.7
|
1.0
|
|
CA
|
A:ASN377
|
4.0
|
18.1
|
1.0
|
|
CB
|
A:ASN377
|
4.1
|
21.4
|
1.0
|
|
N
|
A:ASP379
|
4.1
|
18.3
|
1.0
|
|
N
|
A:ARG382
|
4.2
|
26.3
|
1.0
|
|
CA
|
A:PRO380
|
4.2
|
18.2
|
1.0
|
|
H
|
A:LEU378
|
4.2
|
24.1
|
1.0
|
|
C
|
A:PRO383
|
4.2
|
35.6
|
1.0
|
|
N
|
A:GLY384
|
4.2
|
19.3
|
1.0
|
|
N
|
A:PRO380
|
4.3
|
17.6
|
1.0
|
|
CA
|
A:ASP379
|
4.3
|
19.9
|
1.0
|
|
C
|
A:ASN377
|
4.4
|
19.4
|
1.0
|
|
HB2
|
A:ASN377
|
4.4
|
25.7
|
1.0
|
|
H
|
A:GLY384
|
4.4
|
23.2
|
1.0
|
|
N
|
A:LEU378
|
4.4
|
20.1
|
1.0
|
|
HA
|
A:PRO383
|
4.5
|
35.5
|
1.0
|
|
O
|
A:PRO383
|
4.5
|
28.8
|
1.0
|
|
N
|
A:LEU385
|
4.5
|
24.5
|
1.0
|
|
HD21
|
A:ASN377
|
4.5
|
23.4
|
1.0
|
|
CA
|
A:LEU385
|
4.5
|
19.4
|
1.0
|
|
C
|
A:PRO380
|
4.5
|
19.6
|
1.0
|
|
N
|
A:PRO383
|
4.5
|
31.1
|
1.0
|
|
CG
|
A:GLU386
|
4.6
|
22.7
|
1.0
|
|
CA
|
A:GLY384
|
4.6
|
26.4
|
1.0
|
|
CB
|
A:ASP379
|
4.6
|
19.3
|
1.0
|
|
CA
|
A:PRO383
|
4.6
|
29.6
|
1.0
|
|
HD21
|
A:LEU385
|
4.8
|
20.5
|
1.0
|
|
HE
|
A:ARG382
|
4.9
|
26.7
|
1.0
|
|
HG3
|
A:GLU386
|
4.9
|
27.2
|
1.0
|
|
C
|
A:LEU385
|
4.9
|
18.1
|
1.0
|
|
O
|
A:PRO380
|
4.9
|
25.0
|
1.0
|
|
HG2
|
A:GLU386
|
4.9
|
27.2
|
1.0
|
|
HB3
|
A:ASN377
|
4.9
|
25.7
|
1.0
|
|
N
|
A:SER381
|
5.0
|
19.9
|
1.0
|
|
HA
|
A:ARG382
|
5.0
|
30.9
|
1.0
|
|
Calcium binding site 9 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 9 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca609
b:42.0
occ:1.00
|
OD1
|
A:ASP130
|
2.3
|
17.2
|
1.0
|
|
OD1
|
A:ASP128
|
2.5
|
23.5
|
1.0
|
|
OE1
|
A:GLU136
|
2.5
|
13.4
|
1.0
|
|
O
|
A:GLN134
|
2.6
|
15.5
|
1.0
|
|
OD1
|
A:ASP132
|
2.7
|
27.2
|
1.0
|
|
OE2
|
A:GLU136
|
2.7
|
18.9
|
1.0
|
|
CD
|
A:GLU136
|
3.0
|
18.6
|
1.0
|
|
H
|
A:ASP130
|
3.1
|
27.3
|
1.0
|
|
HA
|
A:ASP128
|
3.1
|
21.8
|
1.0
|
|
H
|
A:ASP132
|
3.2
|
22.7
|
1.0
|
|
CG
|
A:ASP132
|
3.4
|
24.3
|
1.0
|
|
H
|
A:GLY131
|
3.4
|
28.9
|
1.0
|
|
CG
|
A:ASP128
|
3.4
|
16.4
|
1.0
|
|
H
|
A:GLN134
|
3.5
|
27.8
|
1.0
|
|
CG
|
A:ASP130
|
3.5
|
25.3
|
1.0
|
|
HZ2
|
A:LYS164
|
3.5
|
29.6
|
1.0
|
|
H
|
A:LEU129
|
3.5
|
19.2
|
1.0
|
|
HZ1
|
A:LYS164
|
3.7
|
29.6
|
1.0
|
|
OD2
|
A:ASP132
|
3.7
|
20.2
|
1.0
|
|
C
|
A:GLN134
|
3.7
|
16.6
|
1.0
|
|
CA
|
A:ASP128
|
3.9
|
18.1
|
1.0
|
|
N
|
A:LEU129
|
3.9
|
16.0
|
1.0
|
|
N
|
A:ASP130
|
4.0
|
22.7
|
1.0
|
|
N
|
A:ASP132
|
4.0
|
18.9
|
1.0
|
|
NZ
|
A:LYS164
|
4.0
|
24.7
|
1.0
|
|
OD2
|
A:ASP130
|
4.1
|
25.3
|
1.0
|
|
N
|
A:GLY131
|
4.1
|
24.1
|
1.0
|
|
HB3
|
A:GLN134
|
4.1
|
27.8
|
1.0
|
|
C
|
A:ASP128
|
4.2
|
21.6
|
1.0
|
|
H
|
A:GLY133
|
4.2
|
30.0
|
1.0
|
|
CB
|
A:ASP128
|
4.2
|
12.2
|
1.0
|
|
N
|
A:GLN134
|
4.2
|
23.1
|
1.0
|
|
OD2
|
A:ASP128
|
4.2
|
18.5
|
1.0
|
|
H
|
A:GLU136
|
4.3
|
21.5
|
1.0
|
|
HA
|
A:TYR135
|
4.5
|
18.2
|
1.0
|
|
CB
|
A:ASP132
|
4.5
|
24.7
|
1.0
|
|
CA
|
A:GLN134
|
4.5
|
25.0
|
1.0
|
|
CG
|
A:GLU136
|
4.5
|
14.9
|
1.0
|
|
HB2
|
A:ASP128
|
4.5
|
14.6
|
1.0
|
|
N
|
A:GLU136
|
4.6
|
17.9
|
1.0
|
|
HZ3
|
A:LYS164
|
4.6
|
29.6
|
1.0
|
|
N
|
A:GLY133
|
4.6
|
25.0
|
1.0
|
|
HB3
|
A:ASP132
|
4.6
|
29.6
|
1.0
|
|
CA
|
A:ASP132
|
4.6
|
23.6
|
1.0
|
|
HB2
|
A:LEU129
|
4.6
|
22.2
|
1.0
|
|
CA
|
A:ASP130
|
4.6
|
23.7
|
1.0
|
|
CB
|
A:ASP130
|
4.7
|
16.6
|
1.0
|
|
O
|
A:HOH2052
|
4.7
|
16.2
|
1.0
|
|
HE2
|
A:LYS164
|
4.7
|
35.1
|
1.0
|
|
C
|
A:TYR135
|
4.7
|
21.5
|
1.0
|
|
N
|
A:TYR135
|
4.7
|
15.0
|
1.0
|
|
C
|
A:ASP130
|
4.7
|
23.4
|
1.0
|
|
CB
|
A:GLN134
|
4.8
|
23.2
|
1.0
|
|
CA
|
A:TYR135
|
4.9
|
15.2
|
1.0
|
|
O
|
A:GLY127
|
4.9
|
21.9
|
1.0
|
|
HG2
|
A:GLU136
|
4.9
|
17.9
|
1.0
|
|
C
|
A:ASP132
|
4.9
|
27.3
|
1.0
|
|
CA
|
A:LEU129
|
4.9
|
19.7
|
1.0
|
|
CA
|
A:GLY131
|
4.9
|
19.9
|
1.0
|
|
C
|
A:GLY131
|
4.9
|
18.7
|
1.0
|
|
C
|
A:LEU129
|
5.0
|
19.7
|
1.0
|
|
HG3
|
A:GLU136
|
5.0
|
17.9
|
1.0
|
|
HB2
|
A:GLU136
|
5.0
|
21.2
|
1.0
|
|
Calcium binding site 10 out
of 10 in 4cag
Go back to
Calcium Binding Sites List in 4cag
Calcium binding site 10 out
of 10 in the Bacillus Licheniformis Rhamnogalacturonan Lyase PL11
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Bacillus Licheniformis Rhamnogalacturonan Lyase PL11 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca610
b:14.4
occ:1.00
|
O
|
A:HOH2220
|
2.3
|
14.0
|
1.0
|
|
O
|
A:LEU515
|
2.3
|
17.6
|
1.0
|
|
O
|
A:ARG519
|
2.3
|
16.7
|
1.0
|
|
O
|
A:ASP517
|
2.4
|
16.8
|
1.0
|
|
OD1
|
A:ASP513
|
2.4
|
15.0
|
1.0
|
|
OE2
|
A:GLU521
|
2.5
|
11.0
|
1.0
|
|
OE1
|
A:GLU521
|
2.6
|
16.1
|
1.0
|
|
CD
|
A:GLU521
|
2.9
|
13.2
|
1.0
|
|
CG
|
A:ASP513
|
3.4
|
12.7
|
1.0
|
|
HA
|
A:ASP513
|
3.4
|
12.8
|
1.0
|
|
C
|
A:ARG519
|
3.5
|
14.9
|
1.0
|
|
C
|
A:ASP517
|
3.5
|
20.4
|
1.0
|
|
C
|
A:LEU515
|
3.5
|
22.2
|
1.0
|
|
H
|
A:LEU515
|
3.5
|
22.8
|
1.0
|
|
HB3
|
A:ASP517
|
3.7
|
29.6
|
1.0
|
|
C
|
A:GLY516
|
3.9
|
17.2
|
1.0
|
|
N
|
A:ARG519
|
3.9
|
17.1
|
1.0
|
|
H
|
A:ARG519
|
4.0
|
20.5
|
1.0
|
|
O
|
A:GLY516
|
4.0
|
20.3
|
1.0
|
|
N
|
A:ASP517
|
4.0
|
16.9
|
1.0
|
|
HB2
|
A:ASP513
|
4.0
|
13.1
|
1.0
|
|
CB
|
A:ASP513
|
4.1
|
10.9
|
1.0
|
|
HA
|
A:GLU520
|
4.1
|
15.7
|
1.0
|
|
HG1
|
A:THR536
|
4.1
|
14.8
|
1.0
|
|
CA
|
A:ASP513
|
4.1
|
10.7
|
1.0
|
|
CA
|
A:ASP517
|
4.1
|
25.7
|
1.0
|
|
O
|
A:HOH2012
|
4.2
|
9.8
|
1.0
|
|
N
|
A:LEU515
|
4.2
|
19.0
|
1.0
|
|
OD2
|
A:ASP513
|
4.2
|
12.1
|
1.0
|
|
CA
|
A:ARG519
|
4.2
|
14.9
|
1.0
|
|
C
|
A:TRP518
|
4.3
|
14.7
|
1.0
|
|
CB
|
A:ASP517
|
4.3
|
24.6
|
1.0
|
|
O
|
A:HOH2221
|
4.4
|
12.4
|
1.0
|
|
HA3
|
A:GLY516
|
4.4
|
27.3
|
1.0
|
|
N
|
A:GLY516
|
4.4
|
19.4
|
1.0
|
|
CG
|
A:GLU521
|
4.4
|
16.1
|
1.0
|
|
CA
|
A:GLY516
|
4.4
|
22.7
|
1.0
|
|
CA
|
A:LEU515
|
4.4
|
15.9
|
1.0
|
|
N
|
A:GLU520
|
4.4
|
14.2
|
1.0
|
|
N
|
A:TRP518
|
4.5
|
22.6
|
1.0
|
|
H
|
A:ASP517
|
4.5
|
20.2
|
1.0
|
|
H
|
A:GLU521
|
4.5
|
20.1
|
1.0
|
|
HB2
|
A:ARG519
|
4.5
|
23.5
|
1.0
|
|
HA
|
A:TRP518
|
4.5
|
18.8
|
1.0
|
|
C
|
A:ASP513
|
4.6
|
14.9
|
1.0
|
|
CA
|
A:GLU520
|
4.6
|
13.0
|
1.0
|
|
HB2
|
A:ASP517
|
4.6
|
29.6
|
1.0
|
|
CA
|
A:TRP518
|
4.7
|
15.7
|
1.0
|
|
N
|
A:GLU521
|
4.7
|
16.7
|
1.0
|
|
O
|
A:HOH2219
|
4.7
|
11.1
|
1.0
|
|
HB2
|
A:LEU515
|
4.7
|
22.1
|
1.0
|
|
N
|
A:ILE514
|
4.7
|
16.3
|
1.0
|
|
C
|
A:GLU520
|
4.7
|
13.7
|
1.0
|
|
OG1
|
A:THR536
|
4.7
|
12.3
|
1.0
|
|
HB3
|
A:ARG519
|
4.8
|
23.5
|
1.0
|
|
O
|
A:TRP518
|
4.8
|
12.7
|
1.0
|
|
HG2
|
A:GLU521
|
4.8
|
19.3
|
1.0
|
|
HG3
|
A:GLU521
|
4.8
|
19.3
|
1.0
|
|
CB
|
A:ARG519
|
4.8
|
19.6
|
1.0
|
|
HG
|
A:SER30
|
5.0
|
17.2
|
1.0
|
|
Reference:
I.R.Silva,
C.Jers,
H.Otten,
C.Nyffenegger,
D.M.Larsen,
P.M.F.Derkx,
A.S.Meyer,
J.D.Mikkelsen,
S.Larsen.
Design of Thermostable Rhamnogalacturonan Lyase Mutants From Bacillus Licheniformis By Combination of Targeted Single Point Mutations. Appl.Microbiol.Biotechnol. V. 98 4521 2014.
ISSN: ISSN 0175-7598
PubMed: 24419797
DOI: 10.1007/S00253-013-5483-8
Page generated: Sat Jul 13 22:59:29 2024
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