Calcium in PDB 4ce8: Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Protein crystallography data
The structure of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium, PDB code: 4ce8
was solved by
M.G.Cuypers,
E.P.Mitchell,
E.Mossou,
M.Pokorna,
M.Wimmerova,
A.Imberty,
M.Moulin,
M.Haertlein,
V.T.Forsyth,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.463 /
0.90
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.480,
72.490,
54.610,
90.00,
94.10,
90.00
|
R / Rfree (%)
|
12.47 /
14.05
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
(pdb code 4ce8). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium, PDB code: 4ce8:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 1 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca997
b:4.0
occ:1.00
|
OD1
|
A:ASP99
|
2.4
|
6.0
|
1.0
|
OD1
|
A:ASP101
|
2.4
|
4.8
|
1.0
|
OE2
|
A:GLU95
|
2.4
|
4.6
|
1.0
|
OD2
|
A:ASP104
|
2.4
|
4.3
|
1.0
|
OE1
|
A:GLU95
|
2.5
|
4.5
|
1.0
|
O3
|
A:FUC999
|
2.5
|
4.5
|
1.0
|
O2
|
A:FUC999
|
2.5
|
5.4
|
1.0
|
OD1
|
A:ASP104
|
2.6
|
4.0
|
1.0
|
CD
|
A:GLU95
|
2.8
|
4.6
|
1.0
|
CG
|
A:ASP104
|
2.9
|
3.8
|
1.0
|
C2
|
A:FUC999
|
3.3
|
5.3
|
1.0
|
C3
|
A:FUC999
|
3.4
|
4.7
|
1.0
|
CG
|
A:ASP99
|
3.4
|
6.0
|
1.0
|
D
|
A:ASP101
|
3.4
|
6.7
|
1.0
|
CG
|
A:ASP101
|
3.4
|
5.1
|
1.0
|
H2
|
A:FUC999
|
3.4
|
6.3
|
1.0
|
H3
|
A:FUC999
|
3.7
|
5.6
|
1.0
|
OD2
|
A:ASP99
|
3.7
|
6.2
|
1.0
|
CA
|
A:CA998
|
3.7
|
3.8
|
1.0
|
D
|
A:TYR102
|
3.8
|
5.3
|
1.0
|
D
|
A:ASP96
|
3.8
|
5.5
|
1.0
|
DA
|
A:GLU95
|
3.9
|
4.6
|
1.0
|
OD2
|
A:ASP101
|
4.0
|
4.8
|
1.0
|
D
|
A:ASN100
|
4.0
|
8.1
|
1.0
|
D
|
A:GLY97
|
4.0
|
6.8
|
1.0
|
D
|
A:ASP99
|
4.1
|
7.7
|
1.0
|
O
|
A:HOH3246
|
4.1
|
13.2
|
1.0
|
N
|
A:ASP101
|
4.1
|
5.5
|
1.0
|
OD1
|
A:ASP96
|
4.3
|
4.4
|
0.6
|
CG
|
A:GLU95
|
4.3
|
4.8
|
1.0
|
CB
|
A:ASP104
|
4.4
|
3.9
|
1.0
|
N
|
A:TYR102
|
4.4
|
4.4
|
1.0
|
D
|
A:ASN103
|
4.4
|
4.7
|
1.0
|
N
|
A:ASN100
|
4.5
|
6.7
|
1.0
|
DA3
|
A:GLY97
|
4.5
|
8.1
|
1.0
|
N
|
A:ASP96
|
4.5
|
4.5
|
1.0
|
CB
|
A:ASP101
|
4.6
|
5.8
|
1.0
|
N
|
A:GLY97
|
4.6
|
5.7
|
1.0
|
DG3
|
A:GLU95
|
4.6
|
5.8
|
1.0
|
D
|
A:ASP104
|
4.7
|
4.4
|
1.0
|
C4
|
A:FUC999
|
4.7
|
5.4
|
1.0
|
CA
|
A:GLU95
|
4.7
|
3.9
|
1.0
|
CA
|
A:ASP101
|
4.7
|
5.5
|
1.0
|
CB
|
A:ASP99
|
4.7
|
6.4
|
1.0
|
C1
|
A:FUC999
|
4.7
|
6.3
|
1.0
|
DB2
|
A:ASP104
|
4.7
|
4.7
|
1.0
|
OD1
|
A:ASN103
|
4.7
|
4.2
|
1.0
|
N
|
A:ASP99
|
4.7
|
6.4
|
1.0
|
DG2
|
A:GLU95
|
4.8
|
5.8
|
1.0
|
O4
|
A:FUC999
|
4.8
|
4.9
|
1.0
|
DA
|
A:ASN100
|
4.8
|
8.2
|
1.0
|
DB3
|
A:ASP104
|
4.8
|
4.7
|
1.0
|
DB3
|
A:ASP101
|
4.9
|
6.9
|
1.0
|
CB
|
A:GLU95
|
4.9
|
4.6
|
1.0
|
CG
|
A:ASP96
|
5.0
|
4.6
|
0.8
|
DB2
|
A:GLU95
|
5.0
|
5.5
|
1.0
|
D
|
A:THR98
|
5.0
|
9.1
|
1.0
|
CA
|
A:GLY97
|
5.0
|
6.7
|
1.0
|
C
|
A:ASP101
|
5.0
|
4.9
|
1.0
|
|
Calcium binding site 2 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 2 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca998
b:3.8
occ:1.00
|
OD1
|
A:ASN103
|
2.3
|
4.2
|
1.0
|
OD1
|
A:ASP104
|
2.4
|
4.0
|
1.0
|
O
|
A:ASN21
|
2.4
|
4.2
|
1.0
|
OD2
|
A:ASP101
|
2.4
|
4.8
|
1.0
|
O
|
B:GLY114
|
2.4
|
5.1
|
1.0
|
O3
|
A:FUC999
|
2.5
|
4.5
|
1.0
|
O4
|
A:FUC999
|
2.5
|
4.9
|
1.0
|
OD1
|
A:ASP101
|
3.0
|
4.8
|
1.0
|
CG
|
A:ASP101
|
3.1
|
5.1
|
1.0
|
H2
|
A:FUC999
|
3.2
|
6.3
|
1.0
|
DDD2
|
A:ASN103
|
3.4
|
5.9
|
1.0
|
C3
|
A:FUC999
|
3.4
|
4.7
|
1.0
|
CG
|
A:ASN103
|
3.4
|
4.0
|
1.0
|
C
|
B:GLY114
|
3.4
|
5.8
|
1.0
|
C4
|
A:FUC999
|
3.4
|
5.4
|
1.0
|
DA
|
A:ASP104
|
3.5
|
4.4
|
1.0
|
C
|
A:ASN21
|
3.6
|
3.7
|
1.0
|
CG
|
A:ASP104
|
3.6
|
3.8
|
1.0
|
DB3
|
A:ASN21
|
3.6
|
5.1
|
1.0
|
OXT
|
B:GLY114
|
3.7
|
7.4
|
1.0
|
CA
|
A:CA997
|
3.7
|
4.0
|
1.0
|
H4
|
A:FUC999
|
3.7
|
6.5
|
1.0
|
ND2
|
A:ASN103
|
3.8
|
4.9
|
1.0
|
C2
|
A:FUC999
|
3.8
|
5.3
|
1.0
|
DA
|
A:SER22
|
3.8
|
5.8
|
1.0
|
DB2
|
A:ASN21
|
3.8
|
5.1
|
1.0
|
DB2
|
A:SER22
|
4.0
|
6.2
|
1.0
|
CB
|
A:ASN21
|
4.1
|
4.3
|
1.0
|
D
|
A:ASN103
|
4.2
|
4.7
|
1.0
|
CA
|
A:ASP104
|
4.2
|
3.6
|
1.0
|
N
|
A:ASP104
|
4.3
|
3.6
|
1.0
|
H3
|
A:FUC999
|
4.3
|
5.6
|
1.0
|
CA
|
A:SER22
|
4.4
|
4.8
|
1.0
|
O2
|
A:FUC999
|
4.4
|
5.4
|
1.0
|
N
|
A:SER22
|
4.4
|
4.5
|
1.0
|
OD2
|
A:ASP104
|
4.4
|
4.3
|
1.0
|
C
|
A:ASN103
|
4.5
|
3.5
|
1.0
|
CB
|
A:ASP104
|
4.5
|
3.9
|
1.0
|
OD2
|
A:ASP99
|
4.5
|
6.2
|
1.0
|
CA
|
A:ASN21
|
4.5
|
3.9
|
1.0
|
CB
|
A:ASP101
|
4.5
|
5.8
|
1.0
|
D
|
A:ASP104
|
4.6
|
4.4
|
1.0
|
O
|
A:HOH2115
|
4.6
|
9.2
|
0.9
|
DDD1
|
A:ASN103
|
4.6
|
5.9
|
1.0
|
CB
|
A:SER22
|
4.7
|
5.2
|
1.0
|
DB2
|
A:ASP101
|
4.7
|
6.9
|
1.0
|
CB
|
A:ASN103
|
4.7
|
3.8
|
1.0
|
CA
|
B:GLY114
|
4.8
|
5.5
|
1.0
|
C5
|
A:FUC999
|
4.8
|
6.4
|
1.0
|
O
|
A:ASN103
|
4.8
|
3.8
|
1.0
|
DB3
|
A:ASP104
|
4.8
|
4.7
|
1.0
|
N
|
A:ASN103
|
4.9
|
3.9
|
1.0
|
CA
|
A:ASN103
|
4.9
|
3.8
|
1.0
|
DB3
|
A:ASP101
|
4.9
|
6.9
|
1.0
|
OD1
|
A:ASP99
|
5.0
|
6.0
|
1.0
|
|
Calcium binding site 3 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 3 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca997
b:5.9
occ:1.00
|
OD1
|
B:ASP101
|
2.4
|
6.8
|
1.0
|
OD1
|
B:ASP99
|
2.4
|
9.2
|
1.0
|
OD2
|
B:ASP104
|
2.4
|
5.7
|
1.0
|
OE2
|
B:GLU95
|
2.4
|
6.5
|
1.0
|
OE1
|
B:GLU95
|
2.5
|
6.3
|
1.0
|
O3
|
B:FUC999
|
2.5
|
6.3
|
1.0
|
O2
|
B:FUC999
|
2.5
|
7.0
|
1.0
|
OD1
|
B:ASP104
|
2.6
|
5.3
|
1.0
|
CD
|
B:GLU95
|
2.8
|
6.2
|
1.0
|
CG
|
B:ASP104
|
2.9
|
4.7
|
1.0
|
C2
|
B:FUC999
|
3.3
|
7.1
|
1.0
|
C3
|
B:FUC999
|
3.4
|
6.8
|
1.0
|
D
|
B:ASP101
|
3.4
|
9.8
|
1.0
|
CG
|
B:ASP99
|
3.4
|
9.2
|
1.0
|
CG
|
B:ASP101
|
3.4
|
6.9
|
1.0
|
H2
|
B:FUC999
|
3.4
|
8.6
|
1.0
|
H3
|
B:FUC999
|
3.7
|
8.2
|
1.0
|
OD2
|
B:ASP99
|
3.7
|
9.5
|
1.0
|
CA
|
B:CA998
|
3.8
|
5.0
|
1.0
|
D
|
B:ASP96
|
3.8
|
7.2
|
1.0
|
D
|
B:TYR102
|
3.8
|
7.5
|
1.0
|
DA
|
B:GLU95
|
3.9
|
6.8
|
1.0
|
OD2
|
B:ASP101
|
4.0
|
7.0
|
1.0
|
D
|
B:GLY97
|
4.1
|
9.8
|
1.0
|
O
|
B:HOH2120
|
4.1
|
11.6
|
0.7
|
D
|
B:ASP99
|
4.1
|
13.1
|
1.0
|
N
|
B:ASP101
|
4.1
|
8.2
|
1.0
|
D
|
B:ASN100
|
4.1
|
11.4
|
1.0
|
OD1
|
B:ASP96
|
4.2
|
8.1
|
1.0
|
CG
|
B:GLU95
|
4.3
|
6.7
|
1.0
|
CB
|
B:ASP104
|
4.4
|
4.6
|
1.0
|
N
|
B:TYR102
|
4.4
|
6.2
|
1.0
|
D
|
B:ASN103
|
4.4
|
6.0
|
1.0
|
N
|
B:ASN100
|
4.5
|
9.5
|
1.0
|
N
|
B:ASP96
|
4.5
|
6.0
|
1.0
|
CB
|
B:ASP101
|
4.5
|
7.8
|
1.0
|
DA3
|
B:GLY97
|
4.6
|
11.4
|
1.0
|
N
|
B:GLY97
|
4.6
|
8.2
|
1.0
|
DG3
|
B:GLU95
|
4.6
|
8.0
|
1.0
|
D
|
B:ASP104
|
4.7
|
5.0
|
1.0
|
C4
|
B:FUC999
|
4.7
|
6.7
|
1.0
|
CA
|
B:ASP101
|
4.7
|
8.0
|
1.0
|
DB2
|
B:ASP104
|
4.7
|
5.5
|
1.0
|
CA
|
B:GLU95
|
4.7
|
5.7
|
1.0
|
C1
|
B:FUC999
|
4.7
|
8.2
|
1.0
|
CB
|
B:ASP99
|
4.7
|
10.7
|
1.0
|
N
|
B:ASP99
|
4.8
|
10.9
|
1.0
|
OD1
|
B:ASN103
|
4.8
|
4.8
|
1.0
|
DG2
|
B:GLU95
|
4.8
|
8.0
|
1.0
|
O4
|
B:FUC999
|
4.8
|
6.5
|
1.0
|
DB3
|
B:ASP101
|
4.8
|
9.4
|
1.0
|
DB3
|
B:ASP104
|
4.8
|
5.5
|
1.0
|
DA
|
B:ASN100
|
4.9
|
12.3
|
1.0
|
CB
|
B:GLU95
|
4.9
|
6.2
|
1.0
|
CG
|
B:ASP96
|
4.9
|
6.8
|
1.0
|
DB2
|
B:GLU95
|
4.9
|
7.4
|
1.0
|
C
|
B:ASP101
|
5.0
|
7.2
|
1.0
|
|
Calcium binding site 4 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 4 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca998
b:5.0
occ:1.00
|
OD1
|
B:ASN103
|
2.3
|
4.8
|
1.0
|
O
|
B:ASN21
|
2.4
|
4.9
|
1.0
|
OD1
|
B:ASP104
|
2.4
|
5.3
|
1.0
|
OD2
|
B:ASP101
|
2.4
|
7.0
|
1.0
|
O
|
A:GLY114
|
2.4
|
6.2
|
1.0
|
O4
|
B:FUC999
|
2.5
|
6.5
|
1.0
|
O3
|
B:FUC999
|
2.5
|
6.3
|
1.0
|
OD1
|
B:ASP101
|
3.0
|
6.8
|
1.0
|
CG
|
B:ASP101
|
3.1
|
6.9
|
1.0
|
H2
|
B:FUC999
|
3.2
|
8.6
|
1.0
|
CG
|
B:ASN103
|
3.4
|
4.9
|
1.0
|
DDD2
|
B:ASN103
|
3.4
|
7.4
|
1.0
|
C3
|
B:FUC999
|
3.4
|
6.8
|
1.0
|
C
|
A:GLY114
|
3.4
|
6.6
|
1.0
|
C4
|
B:FUC999
|
3.4
|
6.7
|
1.0
|
DA
|
B:ASP104
|
3.5
|
5.1
|
1.0
|
C
|
B:ASN21
|
3.5
|
4.3
|
1.0
|
CG
|
B:ASP104
|
3.6
|
4.7
|
1.0
|
DB3
|
B:ASN21
|
3.7
|
5.7
|
1.0
|
OXT
|
A:GLY114
|
3.7
|
8.6
|
1.0
|
DA
|
B:SER22
|
3.7
|
6.3
|
1.0
|
CA
|
B:CA997
|
3.8
|
5.9
|
1.0
|
H4
|
B:FUC999
|
3.8
|
8.1
|
1.0
|
ND2
|
B:ASN103
|
3.8
|
6.2
|
1.0
|
C2
|
B:FUC999
|
3.8
|
7.1
|
1.0
|
DB2
|
B:ASN21
|
3.9
|
5.7
|
1.0
|
DB2
|
B:SER22
|
3.9
|
6.8
|
1.0
|
D
|
B:ASN103
|
4.2
|
6.0
|
1.0
|
CB
|
B:ASN21
|
4.2
|
4.7
|
1.0
|
CA
|
B:ASP104
|
4.2
|
4.2
|
1.0
|
N
|
B:ASP104
|
4.3
|
4.1
|
1.0
|
CA
|
B:SER22
|
4.4
|
5.3
|
1.0
|
H3
|
B:FUC999
|
4.4
|
8.2
|
1.0
|
N
|
B:SER22
|
4.4
|
4.8
|
1.0
|
C
|
B:ASN103
|
4.4
|
4.2
|
1.0
|
O
|
A:HOH2220
|
4.4
|
12.8
|
0.7
|
OD2
|
B:ASP104
|
4.5
|
5.7
|
1.0
|
O2
|
B:FUC999
|
4.5
|
7.0
|
1.0
|
CB
|
B:ASP104
|
4.5
|
4.6
|
1.0
|
D
|
B:ASP104
|
4.5
|
5.0
|
1.0
|
OD2
|
B:ASP99
|
4.5
|
9.5
|
1.0
|
CA
|
B:ASN21
|
4.5
|
4.5
|
1.0
|
CB
|
B:ASP101
|
4.5
|
7.8
|
1.0
|
CB
|
B:SER22
|
4.6
|
5.6
|
1.0
|
DDD1
|
B:ASN103
|
4.6
|
7.4
|
1.0
|
CB
|
B:ASN103
|
4.7
|
5.1
|
1.0
|
DB2
|
B:ASP101
|
4.7
|
9.4
|
1.0
|
O
|
B:ASN103
|
4.8
|
4.6
|
1.0
|
C5
|
B:FUC999
|
4.8
|
7.6
|
1.0
|
CA
|
A:GLY114
|
4.8
|
7.5
|
1.0
|
DB3
|
B:ASP104
|
4.8
|
5.5
|
1.0
|
N
|
B:ASN103
|
4.8
|
5.0
|
1.0
|
CA
|
B:ASN103
|
4.9
|
4.6
|
1.0
|
DB3
|
B:ASP101
|
4.9
|
9.4
|
1.0
|
H63
|
B:FUC999
|
5.0
|
11.0
|
1.0
|
|
Calcium binding site 5 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 5 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca997
b:4.6
occ:1.00
|
OD1
|
C:ASP99
|
2.3
|
7.0
|
1.0
|
OD1
|
C:ASP101
|
2.4
|
5.4
|
1.0
|
OE2
|
C:GLU95
|
2.4
|
5.3
|
1.0
|
OD2
|
C:ASP104
|
2.4
|
5.0
|
1.0
|
OE1
|
C:GLU95
|
2.5
|
4.6
|
1.0
|
O3
|
C:FUC999
|
2.5
|
5.2
|
1.0
|
O2
|
C:FUC999
|
2.5
|
6.1
|
1.0
|
OD1
|
C:ASP104
|
2.6
|
4.5
|
1.0
|
CD
|
C:GLU95
|
2.8
|
4.5
|
1.0
|
CG
|
C:ASP104
|
2.9
|
4.3
|
1.0
|
C2
|
C:FUC999
|
3.3
|
6.2
|
1.0
|
CG
|
C:ASP99
|
3.4
|
6.7
|
1.0
|
D
|
C:ASP101
|
3.4
|
6.4
|
1.0
|
C3
|
C:FUC999
|
3.4
|
6.2
|
1.0
|
H2
|
C:FUC999
|
3.4
|
7.5
|
1.0
|
CG
|
C:ASP101
|
3.4
|
5.0
|
1.0
|
OD2
|
C:ASP99
|
3.7
|
7.6
|
1.0
|
H3
|
C:FUC999
|
3.7
|
7.5
|
1.0
|
CA
|
C:CA998
|
3.7
|
4.3
|
1.0
|
D
|
C:TYR102
|
3.8
|
5.6
|
1.0
|
D
|
C:ASP96
|
3.8
|
5.8
|
1.0
|
DA
|
C:GLU95
|
3.9
|
5.2
|
1.0
|
OD2
|
C:ASP101
|
4.0
|
5.3
|
1.0
|
D
|
C:GLY97
|
4.0
|
7.5
|
1.0
|
D
|
C:ASN100
|
4.1
|
7.2
|
1.0
|
D
|
C:ASP99
|
4.1
|
8.9
|
1.0
|
O
|
C:HOH2104
|
4.1
|
10.1
|
0.8
|
N
|
C:ASP101
|
4.1
|
5.3
|
1.0
|
OD1
|
C:ASP96
|
4.2
|
7.7
|
1.0
|
CG
|
C:GLU95
|
4.3
|
4.8
|
1.0
|
CB
|
C:ASP104
|
4.4
|
4.6
|
1.0
|
D
|
C:ASN103
|
4.4
|
4.9
|
1.0
|
N
|
C:TYR102
|
4.5
|
4.7
|
1.0
|
N
|
C:ASN100
|
4.5
|
6.0
|
1.0
|
N
|
C:ASP96
|
4.5
|
4.8
|
1.0
|
CB
|
C:ASP101
|
4.6
|
5.9
|
1.0
|
DG3
|
C:GLU95
|
4.6
|
5.8
|
1.0
|
N
|
C:GLY97
|
4.6
|
6.3
|
1.0
|
DA3
|
C:GLY97
|
4.6
|
9.1
|
1.0
|
DB2
|
C:ASP104
|
4.7
|
5.5
|
1.0
|
D
|
C:ASP104
|
4.7
|
4.5
|
1.0
|
C4
|
C:FUC999
|
4.7
|
6.2
|
1.0
|
CA
|
C:ASP101
|
4.7
|
5.4
|
1.0
|
CB
|
C:ASP99
|
4.7
|
7.8
|
1.0
|
CA
|
C:GLU95
|
4.7
|
4.3
|
1.0
|
C1
|
C:FUC999
|
4.7
|
7.7
|
1.0
|
OD1
|
C:ASN103
|
4.7
|
4.3
|
1.0
|
N
|
C:ASP99
|
4.7
|
7.4
|
1.0
|
DG2
|
C:GLU95
|
4.8
|
5.8
|
1.0
|
O4
|
C:FUC999
|
4.8
|
5.7
|
1.0
|
DB3
|
C:ASP104
|
4.8
|
5.5
|
1.0
|
DA
|
C:ASN100
|
4.8
|
7.0
|
1.0
|
DB3
|
C:ASP101
|
4.9
|
7.0
|
1.0
|
CB
|
C:GLU95
|
4.9
|
4.8
|
1.0
|
CG
|
C:ASP96
|
5.0
|
5.9
|
1.0
|
DB2
|
C:GLU95
|
5.0
|
5.7
|
1.0
|
C
|
C:ASP99
|
5.0
|
6.5
|
1.0
|
|
Calcium binding site 6 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 6 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca998
b:4.3
occ:1.00
|
OD1
|
C:ASN103
|
2.3
|
4.3
|
1.0
|
OD1
|
C:ASP104
|
2.4
|
4.5
|
1.0
|
O
|
C:ASN21
|
2.4
|
4.7
|
1.0
|
OD2
|
C:ASP101
|
2.4
|
5.3
|
1.0
|
O
|
D:GLY114
|
2.4
|
5.8
|
1.0
|
O4
|
C:FUC999
|
2.5
|
5.7
|
1.0
|
O3
|
C:FUC999
|
2.5
|
5.2
|
1.0
|
OD1
|
C:ASP101
|
3.0
|
5.4
|
1.0
|
CG
|
C:ASP101
|
3.1
|
5.0
|
1.0
|
H2
|
C:FUC999
|
3.2
|
7.5
|
1.0
|
DDD2
|
C:ASN103
|
3.4
|
7.1
|
1.0
|
CG
|
C:ASN103
|
3.4
|
4.5
|
1.0
|
C3
|
C:FUC999
|
3.4
|
6.2
|
1.0
|
C4
|
C:FUC999
|
3.4
|
6.2
|
1.0
|
C
|
D:GLY114
|
3.4
|
6.4
|
1.0
|
DA
|
C:ASP104
|
3.5
|
4.9
|
1.0
|
C
|
C:ASN21
|
3.5
|
4.4
|
1.0
|
CG
|
C:ASP104
|
3.6
|
4.3
|
1.0
|
DB3
|
C:ASN21
|
3.7
|
5.5
|
1.0
|
OXT
|
D:GLY114
|
3.7
|
8.2
|
1.0
|
CA
|
C:CA997
|
3.7
|
4.6
|
1.0
|
H4
|
C:FUC999
|
3.8
|
7.4
|
1.0
|
ND2
|
C:ASN103
|
3.8
|
5.9
|
1.0
|
DA
|
C:SER22
|
3.8
|
6.4
|
1.0
|
C2
|
C:FUC999
|
3.8
|
6.2
|
1.0
|
DB2
|
C:ASN21
|
3.8
|
5.5
|
1.0
|
DB2
|
C:SER22
|
4.0
|
7.4
|
1.0
|
CB
|
C:ASN21
|
4.1
|
4.5
|
1.0
|
D
|
C:ASN103
|
4.2
|
4.9
|
1.0
|
CA
|
C:ASP104
|
4.2
|
4.1
|
1.0
|
N
|
C:ASP104
|
4.3
|
3.8
|
1.0
|
H3
|
C:FUC999
|
4.4
|
7.5
|
1.0
|
O
|
C:HOH2197
|
4.4
|
8.2
|
0.6
|
CA
|
C:SER22
|
4.4
|
5.3
|
1.0
|
N
|
C:SER22
|
4.4
|
4.9
|
1.0
|
O2
|
C:FUC999
|
4.4
|
6.1
|
1.0
|
OD2
|
C:ASP104
|
4.5
|
5.0
|
1.0
|
C
|
C:ASN103
|
4.5
|
3.8
|
1.0
|
CB
|
C:ASP104
|
4.5
|
4.6
|
1.0
|
CB
|
C:ASP101
|
4.5
|
5.9
|
1.0
|
CA
|
C:ASN21
|
4.5
|
4.2
|
1.0
|
OD2
|
C:ASP99
|
4.5
|
7.6
|
1.0
|
D
|
C:ASP104
|
4.6
|
4.5
|
1.0
|
DDD1
|
C:ASN103
|
4.6
|
7.1
|
1.0
|
CB
|
C:SER22
|
4.7
|
6.2
|
1.0
|
DB2
|
C:ASP101
|
4.7
|
7.0
|
1.0
|
CB
|
C:ASN103
|
4.7
|
4.3
|
1.0
|
C5
|
C:FUC999
|
4.8
|
8.1
|
1.0
|
O
|
C:ASN103
|
4.8
|
4.0
|
1.0
|
DB3
|
C:ASP104
|
4.8
|
5.5
|
1.0
|
CA
|
D:GLY114
|
4.8
|
6.5
|
1.0
|
N
|
C:ASN103
|
4.9
|
4.1
|
1.0
|
DB3
|
C:ASP101
|
4.9
|
7.0
|
1.0
|
CA
|
C:ASN103
|
4.9
|
4.0
|
1.0
|
H61
|
C:FUC999
|
5.0
|
10.6
|
1.0
|
|
Calcium binding site 7 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 7 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca997
b:4.6
occ:1.00
|
OD1
|
D:ASP99
|
2.4
|
7.0
|
1.0
|
OD1
|
D:ASP101
|
2.4
|
5.3
|
1.0
|
OE2
|
D:GLU95
|
2.4
|
5.6
|
1.0
|
OD2
|
D:ASP104
|
2.4
|
4.8
|
1.0
|
O3
|
D:FUC999
|
2.5
|
4.8
|
1.0
|
OE1
|
D:GLU95
|
2.5
|
5.2
|
1.0
|
O2
|
D:FUC999
|
2.5
|
5.5
|
1.0
|
OD1
|
D:ASP104
|
2.6
|
4.3
|
1.0
|
CD
|
D:GLU95
|
2.8
|
4.8
|
1.0
|
CG
|
D:ASP104
|
2.9
|
3.9
|
1.0
|
C2
|
D:FUC999
|
3.3
|
5.6
|
1.0
|
D
|
D:ASP101
|
3.4
|
7.8
|
1.0
|
C3
|
D:FUC999
|
3.4
|
5.4
|
1.0
|
CG
|
D:ASP99
|
3.4
|
7.0
|
1.0
|
CG
|
D:ASP101
|
3.4
|
5.1
|
1.0
|
H2
|
D:FUC999
|
3.4
|
6.8
|
1.0
|
H3
|
D:FUC999
|
3.7
|
6.5
|
1.0
|
OD2
|
D:ASP99
|
3.7
|
8.0
|
1.0
|
CA
|
D:CA998
|
3.7
|
4.0
|
1.0
|
D
|
D:TYR102
|
3.8
|
6.1
|
1.0
|
D
|
D:ASP96
|
3.8
|
6.1
|
1.0
|
DA
|
D:GLU95
|
3.9
|
5.9
|
1.0
|
OD2
|
D:ASP101
|
4.0
|
5.3
|
1.0
|
D
|
D:ASP99
|
4.1
|
10.4
|
1.0
|
D
|
D:GLY97
|
4.1
|
8.7
|
1.0
|
D
|
D:ASN100
|
4.1
|
9.7
|
1.0
|
O
|
D:HOH2154
|
4.1
|
13.4
|
0.9
|
N
|
D:ASP101
|
4.1
|
6.5
|
1.0
|
OD1
|
D:ASP96
|
4.2
|
6.7
|
1.0
|
CG
|
D:GLU95
|
4.3
|
5.6
|
1.0
|
CB
|
D:ASP104
|
4.4
|
4.3
|
1.0
|
N
|
D:TYR102
|
4.4
|
5.1
|
1.0
|
D
|
D:ASN103
|
4.5
|
5.1
|
1.0
|
N
|
D:ASN100
|
4.5
|
8.1
|
1.0
|
DA3
|
D:GLY97
|
4.5
|
10.3
|
1.0
|
N
|
D:ASP96
|
4.5
|
5.1
|
1.0
|
CB
|
D:ASP101
|
4.6
|
6.0
|
1.0
|
DG3
|
D:GLU95
|
4.6
|
6.7
|
1.0
|
N
|
D:GLY97
|
4.6
|
7.2
|
1.0
|
C4
|
D:FUC999
|
4.7
|
5.2
|
1.0
|
CA
|
D:ASP101
|
4.7
|
6.1
|
1.0
|
DB2
|
D:ASP104
|
4.7
|
5.2
|
1.0
|
CA
|
D:GLU95
|
4.7
|
4.9
|
1.0
|
D
|
D:ASP104
|
4.7
|
4.6
|
1.0
|
CB
|
D:ASP99
|
4.7
|
8.8
|
1.0
|
C1
|
D:FUC999
|
4.7
|
6.3
|
1.0
|
N
|
D:ASP99
|
4.7
|
8.7
|
1.0
|
OD1
|
D:ASN103
|
4.7
|
4.3
|
1.0
|
DG2
|
D:GLU95
|
4.8
|
6.7
|
1.0
|
O4
|
D:FUC999
|
4.8
|
4.9
|
1.0
|
DB3
|
D:ASP104
|
4.8
|
5.2
|
1.0
|
DA
|
D:ASN100
|
4.9
|
9.5
|
1.0
|
DB3
|
D:ASP101
|
4.9
|
7.2
|
1.0
|
CB
|
D:GLU95
|
4.9
|
5.4
|
1.0
|
DB2
|
D:GLU95
|
4.9
|
6.5
|
1.0
|
CG
|
D:ASP96
|
4.9
|
5.6
|
1.0
|
D
|
D:THR98
|
5.0
|
10.7
|
1.0
|
C
|
D:ASP99
|
5.0
|
8.0
|
1.0
|
CA
|
D:GLY97
|
5.0
|
8.6
|
1.0
|
C
|
D:ASP101
|
5.0
|
5.5
|
1.0
|
|
Calcium binding site 8 out
of 8 in 4ce8
Go back to
Calcium Binding Sites List in 4ce8
Calcium binding site 8 out
of 8 in the Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L-Fucose and Calcium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca998
b:4.0
occ:1.00
|
OD1
|
D:ASN103
|
2.3
|
4.3
|
1.0
|
OD1
|
D:ASP104
|
2.4
|
4.3
|
1.0
|
O
|
D:ASN21
|
2.4
|
3.9
|
1.0
|
O
|
C:GLY114
|
2.4
|
5.1
|
1.0
|
OD2
|
D:ASP101
|
2.4
|
5.3
|
1.0
|
O4
|
D:FUC999
|
2.5
|
4.9
|
1.0
|
O3
|
D:FUC999
|
2.5
|
4.8
|
1.0
|
OD1
|
D:ASP101
|
3.0
|
5.3
|
1.0
|
CG
|
D:ASP101
|
3.1
|
5.1
|
1.0
|
H2
|
D:FUC999
|
3.2
|
6.8
|
1.0
|
DDD2
|
D:ASN103
|
3.4
|
6.6
|
1.0
|
CG
|
D:ASN103
|
3.4
|
4.2
|
1.0
|
C3
|
D:FUC999
|
3.4
|
5.4
|
1.0
|
C
|
C:GLY114
|
3.4
|
6.0
|
1.0
|
C4
|
D:FUC999
|
3.4
|
5.2
|
1.0
|
DA
|
D:ASP104
|
3.5
|
4.7
|
1.0
|
C
|
D:ASN21
|
3.6
|
3.8
|
1.0
|
CG
|
D:ASP104
|
3.6
|
3.9
|
1.0
|
DB3
|
D:ASN21
|
3.6
|
5.0
|
1.0
|
OXT
|
C:GLY114
|
3.7
|
8.1
|
1.0
|
CA
|
D:CA997
|
3.7
|
4.6
|
1.0
|
H4
|
D:FUC999
|
3.7
|
6.3
|
1.0
|
ND2
|
D:ASN103
|
3.7
|
5.5
|
1.0
|
DA
|
D:SER22
|
3.8
|
5.1
|
1.0
|
C2
|
D:FUC999
|
3.8
|
5.6
|
1.0
|
DB2
|
D:ASN21
|
3.8
|
5.0
|
1.0
|
DB2
|
D:SER22
|
4.0
|
5.9
|
1.0
|
CB
|
D:ASN21
|
4.1
|
4.1
|
1.0
|
D
|
D:ASN103
|
4.1
|
5.1
|
1.0
|
CA
|
D:ASP104
|
4.2
|
3.9
|
1.0
|
N
|
D:ASP104
|
4.3
|
3.9
|
1.0
|
H3
|
D:FUC999
|
4.4
|
6.5
|
1.0
|
O
|
C:HOH2129
|
4.4
|
12.8
|
0.8
|
CA
|
D:SER22
|
4.4
|
4.3
|
1.0
|
N
|
D:SER22
|
4.4
|
4.1
|
1.0
|
O2
|
D:FUC999
|
4.4
|
5.5
|
1.0
|
OD2
|
D:ASP104
|
4.4
|
4.8
|
1.0
|
C
|
D:ASN103
|
4.4
|
3.7
|
1.0
|
CB
|
D:ASP104
|
4.5
|
4.3
|
1.0
|
CA
|
D:ASN21
|
4.5
|
4.0
|
1.0
|
CB
|
D:ASP101
|
4.5
|
6.0
|
1.0
|
D
|
D:ASP104
|
4.5
|
4.6
|
1.0
|
OD2
|
D:ASP99
|
4.6
|
8.0
|
1.0
|
DDD1
|
D:ASN103
|
4.6
|
6.6
|
1.0
|
CB
|
D:SER22
|
4.7
|
4.9
|
1.0
|
DB2
|
D:ASP101
|
4.7
|
7.2
|
1.0
|
CB
|
D:ASN103
|
4.7
|
4.4
|
1.0
|
C5
|
D:FUC999
|
4.8
|
5.7
|
1.0
|
O
|
D:ASN103
|
4.8
|
4.0
|
1.0
|
CA
|
C:GLY114
|
4.8
|
6.2
|
1.0
|
DB3
|
D:ASP104
|
4.8
|
5.2
|
1.0
|
N
|
D:ASN103
|
4.8
|
4.2
|
1.0
|
CA
|
D:ASN103
|
4.9
|
4.1
|
1.0
|
DB3
|
D:ASP101
|
4.9
|
7.2
|
1.0
|
H63
|
D:FUC999
|
5.0
|
7.3
|
1.0
|
OD1
|
D:ASP99
|
5.0
|
7.0
|
1.0
|
|
Reference:
E.Mossou,
M.G.Cuypers,
E.P.Mitchell,
S.Russi,
M.Pokorna,
M.Wimmerova,
A.Imberty,
S.Mcsweeney,
M.Haertlein,
V.T.Forsyth.
Perdeuterated Pseudomonas Aeruginosa Lectin II Complex with Hydrogenated L Fucose and Calcium To Be Published.
Page generated: Sat Jul 13 23:03:32 2024
|