Atomistry » Calcium » PDB 4ecg-4enz » 4ecg
Atomistry »
  Calcium »
    PDB 4ecg-4enz »
      4ecg »

Calcium in PDB 4ecg: Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution, PDB code: 4ecg was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.12 / 2.30
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 113.892, 113.892, 75.219, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.3

Other elements in 4ecg:

The structure of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution (pdb code 4ecg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution, PDB code: 4ecg:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 1 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:55.1
occ:1.00
 OE1 A:GLN249 2.2 53.7 1.0
O A:HOH686 2.3 50.9 1.0
O A:SER243 2.3 57.1 1.0
O A:HOH678 2.3 46.7 1.0
O A:HOH676 2.4 57.0 1.0
O A:HOH679 2.6 50.4 1.0
O A:HOH688 2.7 47.7 1.0
CD A:GLN249 3.2 53.1 1.0
C A:SER243 3.6 61.3 1.0
NE2 A:GLN249 4.0 50.0 1.0
CB A:SER243 4.1 66.9 1.0
CG A:GLN249 4.2 54.9 1.0
O A:HOH652 4.2 47.2 1.0
CA A:SER243 4.4 65.2 1.0
CB A:GLN249 4.4 54.5 1.0
N A:GLY245 4.5 60.1 1.0
N A:ILE244 4.5 62.3 1.0
CA A:ILE244 4.6 60.0 1.0
O A:HOH681 4.8 46.1 1.0
O A:HOH677 4.9 54.1 1.0
O A:HOH687 4.9 51.0 1.0

Calcium binding site 2 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 2 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:65.6
occ:1.00
 O A:HOH624 2.2 43.4 1.0
O A:HOH689 2.3 48.5 1.0
OE1 A:GLU187 2.3 68.5 1.0
OD1 A:ASP185 2.3 59.3 1.0
O A:HOH690 2.6 53.5 1.0
OD2 A:ASP185 2.9 60.9 1.0
CG A:ASP185 2.9 67.3 1.0
CD A:GLU187 3.5 66.3 1.0
CB A:GLU187 4.3 59.4 1.0
CG A:GLU187 4.3 63.1 1.0
OE2 A:GLU187 4.4 65.4 1.0
CB A:ASP185 4.4 65.7 1.0
O A:HOH632 4.5 49.8 1.0
N A:GLU187 4.6 58.9 1.0
O A:HOH701 4.9 66.2 1.0
OG1 A:THR188 4.9 68.3 1.0
N A:THR188 5.0 63.8 1.0

Calcium binding site 3 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 3 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:1.0
occ:1.00
 O A:HOH691 2.4 69.6 1.0
O A:HOH673 2.8 59.6 1.0
CA A:CA504 2.9 93.5 1.0
O A:HOH674 2.9 55.4 1.0
OE1 A:GLU114 3.8 71.7 1.0
OD1 A:ASP127 3.9 57.1 1.0
OE2 A:GLU114 4.0 79.5 1.0
CD A:GLU114 4.3 68.3 1.0
OD2 A:ASP131 4.3 59.6 1.0
OE2 A:GLU299 4.5 60.4 1.0
O A:HOH709 4.5 62.6 1.0
OD2 A:ASP127 4.5 59.5 1.0
OE1 A:GLU299 4.6 60.5 1.0
CE A:LYS272 4.6 51.1 1.0
NZ A:LYS272 4.7 52.5 1.0
O A:ASP131 4.7 49.6 1.0
CG A:ASP127 4.7 53.9 1.0
OE2 A:GLU267 4.8 72.0 1.0

Calcium binding site 4 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 4 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:93.5
occ:1.00
 OD2 A:ASP131 2.5 59.6 1.0
OE2 A:GLU114 2.7 79.5 1.0
CA A:CA503 2.9 1.0 1.0
OE2 A:GLU299 3.0 60.4 1.0
O A:HOH616 3.1 62.2 1.0
OE2 A:GLU111 3.3 65.1 1.0
O A:HOH674 3.5 55.4 1.0
CG A:ASP131 3.7 58.5 1.0
NZ A:LYS272 3.7 52.5 1.0
CD A:GLU114 3.7 68.3 1.0
OE1 A:GLU111 3.8 60.8 1.0
CD A:GLU299 3.9 64.7 1.0
NH2 A:ARG107 3.9 51.6 1.0
OE1 A:GLU114 4.0 71.7 1.0
CD A:GLU111 4.0 52.4 1.0
O A:HOH691 4.0 69.6 1.0
OE1 A:GLU299 4.1 60.5 1.0
OD1 A:ASP131 4.3 53.1 1.0
CE A:LYS272 4.5 51.1 1.0
NE1 A:TRP110 4.5 52.4 1.0
CB A:ASP131 4.7 52.6 1.0
O A:ASP131 4.9 49.6 1.0
CZ A:ARG107 4.9 48.8 1.0

Calcium binding site 5 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 5 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:87.1
occ:1.00
 O A:HOH692 2.2 59.2 1.0
O A:HOH680 2.5 58.6 1.0
OD1 A:ASP157 2.7 65.5 1.0
OD1 A:ASP159 3.0 92.0 1.0
OD2 A:ASP157 3.2 70.8 1.0
CG A:ASP157 3.3 67.5 1.0
OD2 A:ASP159 3.7 83.4 1.0
CG A:ASP159 3.7 81.8 1.0
CB A:ASP157 4.7 60.1 1.0

Calcium binding site 6 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 6 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca506

b:76.4
occ:1.00
 O A:HOH672 2.5 58.7 1.0
O A:HOH671 2.5 69.0 1.0
OD1 A:ASP275 2.6 63.6 1.0
O A:SER270 2.6 65.9 1.0
O A:HOH670 2.8 47.4 1.0
CG A:ASP275 3.5 61.1 1.0
C A:SER270 3.6 49.6 1.0
OD2 A:ASP275 3.7 70.0 1.0
CB A:SER270 4.1 50.9 1.0
CA A:SER270 4.3 52.1 1.0
N A:ALA271 4.4 50.6 1.0
CA A:ALA271 4.4 48.8 1.0
O A:HOH693 4.8 52.5 1.0
CG2 A:THR274 4.8 52.8 1.0
CB A:THR274 4.9 52.1 1.0
CB A:ASP275 4.9 55.1 1.0

Calcium binding site 7 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 7 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca507

b:74.3
occ:1.00
 O A:HOH700 2.5 73.4 1.0
O A:HOH617 2.6 57.1 1.0
OE1 A:GLU182 2.7 77.2 1.0
O A:HOH701 2.8 66.2 1.0
CD A:GLU182 3.6 73.6 1.0
CB A:GLU182 4.3 61.9 1.0
O A:PRO183 4.3 50.7 1.0
OE2 A:GLU182 4.3 74.5 1.0
CG A:GLU182 4.5 69.1 1.0

Calcium binding site 8 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 8 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca508

b:99.4
occ:1.00
 O A:HOH714 1.8 95.4 1.0
O A:HOH711 2.5 67.7 1.0
O A:HOH713 2.5 74.5 1.0
O A:HOH712 2.8 60.5 1.0
OE2 A:GLU182 3.2 74.5 1.0
CD A:GLU182 3.9 73.6 1.0
CG A:GLU182 4.5 69.1 1.0
OE1 A:GLU182 4.6 77.2 1.0
CH2 A:TRP304 5.0 50.0 1.0

Calcium binding site 9 out of 9 in 4ecg

Go back to Calcium Binding Sites List in 4ecg
Calcium binding site 9 out of 9 in the Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of A Putative Iron-Regulated Protein A Precursor (BDI_2603) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca509

b:79.9
occ:1.00
 O A:TRP133 2.3 52.3 1.0
O A:HOH708 2.4 50.9 1.0
O A:HOH710 2.4 72.5 1.0
O A:HOH709 2.5 62.6 1.0
C A:TRP133 3.6 49.0 1.0
O A:HOH704 4.2 47.6 1.0
CD A:PRO134 4.3 51.8 1.0
N A:PRO134 4.4 51.6 1.0
N A:TRP133 4.5 49.3 1.0
CA A:TRP133 4.6 46.5 1.0
O A:HOH673 4.7 59.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 13 23:53:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy