Calcium in PDB 4f5y: Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp

The structure of Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp, PDB code: 4f5y was solved by L.Gu, G.Shang, D.Zhu, N.Li, J.Zhang, C.Zhu, D.Lu, C.Liu, Q.Yu, Y.Zhao, S.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.84 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.145, 81.438, 91.347, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 27.5

The binding sites of Calcium atom in the Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp (pdb code 4f5y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp, PDB code: 4f5y:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:57.9 occ:1.00 O A:HOH570 2.8 32.9 1.0 OD2 A:ASP205 2.9 42.7 1.0 OE2 A:GLU316 2.9 42.1 1.0 OE1 A:GLU316 2.9 51.8 1.0 CD A:GLU316 3.2 51.4 1.0 CG A:ASP205 3.7 39.1 1.0 OD1 A:ASP205 3.8 37.0 1.0 O A:HOH530 4.0 28.0 1.0 CG A:GLU316 4.7 52.8 1.0 O A:HOH508 4.8 41.4 1.0 O A:GLY207 4.8 39.2 1.0 O A:HOH544 4.8 43.9 1.0 CA A:GLY207 4.9 32.8 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Sting Ctd Complex with C-Di-Gmp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca500 b:61.4 occ:1.00 OD2 B:ASP205 2.9 42.4 1.0 OE2 B:GLU316 3.0 62.1 1.0 OD1 B:ASP205 3.3 39.0 1.0 CG B:ASP205 3.5 40.9 1.0 CD B:GLU316 3.7 68.5 1.0 O B:HOH614 3.9 35.0 1.0 CG B:GLU316 4.2 60.5 1.0 OE1 B:GLU316 4.5 67.3 1.0 CB B:PRO203 4.6 30.6 1.0 O B:GLY207 4.6 48.2 1.0 CA B:GLY207 4.9 35.1 1.0 CE2 B:TYR314 4.9 35.0 1.0

G.Shang, D.Zhu, N.Li, J.Zhang, C.Zhu, D.Lu, C.Liu, Q.Yu, Y.Zhao, S.Xu, L.Gu. Crystal Structures of Sting Protein Reveal Basis For Recognition of Cyclic Di-Gmp Nat.Struct.Mol.Biol. V. 19 725 2012.
ISSN: ISSN 1545-9993
PubMed: 22728660
DOI: 10.1038/NSMB.2332